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AT3G07550 RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819944, updated on 15-Oct-2023

Summary

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Gene symbol
AT3G07550
Gene description
RNI-like superfamily protein
Primary source
Araport:AT3G07550
Locus tag
AT3G07550
See related
TAIR:AT3G07550
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G07550 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Sequence:
Chromosome: 3; NC_003074.8 (2409477..2411329)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene autophagocytosis-associated family protein Neighboring gene integrator complex subunit Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene peroxin 13 Neighboring gene histone H2A deubiquitinase (DUF3755) Neighboring gene fanconi anemia group D2 protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. F-box proteins in Arabidopsis. Xiao W, et al. Trends Plant Sci, 2000 Nov. PMID 11077244
  2. Protein degradation in signaling. Callis J, et al. Curr Opin Plant Biol, 2000 Oct. PMID 11019805
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001337721.1
NM_111633.4
NM_180203.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
RNI-like superfamily protein
NP_566312.1
  • RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
NP_850534.1
  • RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2409477..2411329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_111633.4 → NP_566312.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_566312.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRR1
    UniProtKB/TrEMBL
    A0A178VG45, A0A5S9XA07, A0A7G2EIX4
    Conserved Domains (2) summary
    cd09293
    Location:142 → 361
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:93 → 118
    LRR_AMN1; leucine-rich repeat [structural motif]

  2. NM_180203.3 → NP_850534.1  RNI-like superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850534.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SRR1
    UniProtKB/TrEMBL
    A0A178VG45, A0A5S9XA07, A0A7G2EIX4
    Conserved Domains (2) summary
    cd09293
    Location:142 → 361
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:93 → 118
    LRR_AMN1; leucine-rich repeat [structural motif]

  3. NM_001337721.1 → NP_001325806.1  RNI-like superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LMC6, A0A7G2EIX4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SRR1.1

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