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AT3G07530 integrator complex subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819942, updated on 7-Sep-2023

Summary

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Gene symbol
AT3G07530
Gene description
integrator complex subunit
Primary source
Araport:AT3G07530
Locus tag
AT3G07530
See related
TAIR:AT3G07530
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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See AT3G07530 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Sequence:
Chromosome: 3; NC_003074.8 (2400534..2404499)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glutamate receptor 1.4 Neighboring gene uncharacterized protein Neighboring gene autophagocytosis-associated family protein Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene RNI-like superfamily protein Neighboring gene peroxin 13 Neighboring gene histone H2A deubiquitinase (DUF3755) Neighboring gene fanconi anemia group D2 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_001337719.1
NM_001337720.1
NM_111631.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in snRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of integrator complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
integrator complex subunit
NP_187409.2
  • CONTAINS InterPro DOMAIN/s: Beta-Casp domain (InterPro:IPR022712); BEST Arabidopsis thaliana protein match is: cleavage and polyadenylation specificity factor 73 kDa subunit-II (TAIR:AT2G01730.1); Has 624 Blast hits to 615 proteins in 160 species: Archae - 54; Bacteria - 6; Metazoa - 333; Fungi - 44; Plants - 93; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2400534..2404499
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001337717.1 → NP_001325703.1  integrator complex subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LM20, A0A5S9XA05, A0A654F507
    Conserved Domains (2) summary
    smart01027
    Location:374 → 474
    Beta-Casp; Beta-Casp domain
    cl23716
    Location:101 → 280
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  2. NM_001337718.1 → NP_001325706.1  integrator complex subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LM23, A0A654F507, A0A7G2EGM8
    Conserved Domains (2) summary
    smart01027
    Location:375 → 475
    Beta-Casp; Beta-Casp domain
    cl23716
    Location:101 → 280
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  3. NM_111631.3 → NP_187409.2  integrator complex subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_187409.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654F507, F4JEH2
    Conserved Domains (2) summary
    smart01027
    Location:374 → 478
    Beta-Casp; Beta-Casp domain
    cl23716
    Location:101 → 280
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  4. NM_001337719.1 → NP_001325705.1  integrator complex subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1I9LM22, A0A654F507

  5. NM_001337720.1 → NP_001325704.1  integrator complex subunit [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VBQ3, A0A1I9LM21
Nucleotide Protein
Heading Accession and Version

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