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ATG10 autophagocytosis-associated family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 819941, updated on 6-Oct-2023

Summary

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Gene symbol
ATG10
Gene description
autophagocytosis-associated family protein
Primary source
Araport:AT3G07525
Locus tag
AT3G07525
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATATG10; autophagy 10
Summary
Encodes an E1 ligase involved in autophagic vesicle formation.
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Sequence:
Chromosome: 3; NC_003074.8 (2398951..2400603, complement)

Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glutamate receptor 1.4 Neighboring gene uncharacterized protein Neighboring gene integrator complex subunit Neighboring gene Actin-binding FH2 (formin homology 2) family protein Neighboring gene RNI-like superfamily protein Neighboring gene peroxin 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Autophagy differentially controls plant basal immunity to biotrophic and necrotrophic pathogens. Lenz HD, et al. Plant J, 2011 Jun. PMID 21332848
  2. The formation of Anthocyanic Vacuolar Inclusions in Arabidopsis thaliana and implications for the sequestration of anthocyanin pigments. Pourcel L, et al. Mol Plant, 2010 Jan. PMID 20085894, Free PMC Article
  3. The ATG12-conjugating enzyme ATG10 Is essential for autophagic vesicle formation in Arabidopsis thaliana. Phillips AR, et al. Genetics, 2008 Mar. PMID 18245858, Free PMC Article
  4. A critical role of autophagy in plant resistance to necrotrophic fungal pathogens. Lai Z, et al. Plant J, 2011 Jun. PMID 21395886
  5. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_180201.3
NM_180202.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ubiquitin activating enzyme activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables ubiquitin-like protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within autophagy IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cellular pigment accumulation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in cellular response to nitrogen starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in defense response to bacterium IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within defense response to fungus IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in defense response to fungus IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of autophagosome assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in response to carbon starvation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
autophagocytosis-associated family protein
NP_850532.1
  • autophagy 10 (ATG10); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135); Has 423 Blast hits to 423 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 97; Plants - 56; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
NP_850533.1
  • autophagy 10 (ATG10); CONTAINS InterPro DOMAIN/s: Autophagy-related protein 3 (InterPro:IPR007135); Has 420 Blast hits to 420 proteins in 152 species: Archae - 0; Bacteria - 0; Metazoa - 229; Fungi - 94; Plants - 56; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003074.8 Reference assembly

    Range
    2398951..2400603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_180201.3 → NP_850532.1  autophagocytosis-associated family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850532.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4JEH1, Q8VZ52
    UniProtKB/TrEMBL
    A0A178V6V0
    Conserved Domains (1) summary
    pfam03987
    Location:17 → 222
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain

  2. NM_180202.1 → NP_850533.1  autophagocytosis-associated family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850533.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178V865, A0A5S9XA33
    Conserved Domains (1) summary
    pfam03987
    Location:17 → 223
    Autophagy_act_C; Autophagocytosis associated protein, active-site domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8VZ52.1

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