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bsdc1 BSD domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 794882, updated on 27-Mar-2024

Summary

Official Symbol
bsdc1provided by ZNC
Official Full Name
BSD domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-040905-1
See related
Ensembl:ENSDARG00000052623 AllianceGenome:ZFIN:ZDB-GENE-040905-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb51h12; wu:fb51h12; zgc:100785
Summary
Predicted to be active in cytoplasm. Orthologous to human BSDC1 (BSD domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (45980308..46000116)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (45843584..45863392)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437869 Neighboring gene oligodendrocyte transcription factor 4 Neighboring gene uncharacterized LOC103912036 Neighboring gene uncharacterized LOC103912037 Neighboring gene MARCKS-like 1a

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • FLJ10276, MGC100785, MGC174346

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
BSD domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004108.2NP_001004108.2  BSD domain-containing protein 1

    See identical proteins and their annotated locations for NP_001004108.2

    Status: PROVISIONAL

    Source sequence(s)
    BC155161
    UniProtKB/Swiss-Prot
    A2BIJ3, Q68EL9
    UniProtKB/TrEMBL
    A9JT15
    Related
    ENSDARP00000003318.8, ENSDART00000005195.10
    Conserved Domains (1) summary
    pfam03909
    Location:145201
    BSD; BSD domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    45980308..46000116
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395310.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    208499..226820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)