atg9b autophagy related 9B [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atg9bprovided by ZNC
Official Full Name: autophagy related 9Bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-091111-3
See related: Ensembl:ENSDARG00000055292 AllianceGenome:ZFIN:ZDB-GENE-091111-3
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:158872
Summary: Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in Golgi apparatus; autophagosome membrane; and cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in autophagosome and phagophore assembly site. Orthologous to human ATG9B (autophagy related 9B). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 24

Exon count:: 15

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	24	NC_007135.7 (33802584..33839355)
105	previous assembly	GRCz10 (GCF_000002035.5)	24	NC_007135.6 (33916409..33953180)

Chromosome 24 - NC_007135.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within autophagy	IEA Inferred from Electronic Annotation more info
involved_in autophagy of mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within lipid transport	IEA Inferred from Electronic Annotation more info
involved_in piecemeal microautophagy of the nucleus	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein localization to phagophore assembly site	IBA Inferred from Biological aspect of Ancestor more info
involved_in reticulophagy	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in autophagosome	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in phagophore assembly site	IBA Inferred from Biological aspect of Ancestor more info
located_in phagophore assembly site membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: autophagy-related protein 9B

Names: ATG9 autophagy related 9 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001320078.1 → NP_001307007.1 autophagy-related protein 9B

Status: VALIDATED

Source sequence(s)

CU019563

UniProtKB/TrEMBL

A0A2R8QI63, A0A8M1P2W7

Related

ENSDARP00000154856.1, ENSDART00000182322.1

Conserved Domains (1) summary

pfam04109
Location:179 → 533

APG9; Autophagy protein Apg9

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007135.7 Reference GRCz11 Primary Assembly

Range

33802584..33839355

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_001080705.1: Suppressed sequence

Description

NM_001080705.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
NM_001310133.1: Suppressed sequence

Description

NM_001310133.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.