Flicr Foxp3 regulating long intergenic noncoding RNA [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Flicrprovided by MGI
Official Full Name: Foxp3 regulating long intergenic noncoding RNAprovided by MGI
Primary source: MGI:MGI:1925435
See related: Ensembl:ENSMUSG00000039545 AllianceGenome:MGI:1925435
Gene type: ncRNA
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Ppp1r3fos; 4930524L23Rik
Summary: Acts upstream of or within with a negative effect on gene expression. Acts upstream of or within cellular response to interleukin-2 and chromatin organization. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in ovary adult (RPKM 1.8), thymus adult (RPKM 1.7) and 26 other tissues See more
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Genomic context

Location:: X A1.1; X 3.41 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (7439839..7447255)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (7573600..7581016)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Flicr, a long noncoding RNA, modulates Foxp3 expression and autoimmunity.
Title: Flicr, a long noncoding RNA, modulates Foxp3 expression and autoimmunity.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2) 1 citation

General gene information

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Other Names

Ppp1r3f opposite strand transcript
protein phosphatase 1, regulatory subunit 3F, opposite strand

Gene Ontology Provided by MGI

Process	Evidence Code	Pubs
acts_upstream_of_or_within cellular response to interleukin-2	IDA Inferred from Direct Assay more info	PubMed
acts_upstream_of_or_within chromatin organization	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within_negative_effect gene expression	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.