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ARF4 auxin response factor 4 [ Solanum lycopersicum (tomato) ]

Gene ID: 778241, updated on 9-Nov-2023

Summary

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Gene symbol
ARF4
Gene description
auxin response factor 4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
SlARF4
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Genomic context

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Location:
chromosome: 11
Exon count:
12
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 11 NC_015448.3 (54112109..54120536, complement)
102 previous assembly SL2.50 (GCF_000188115.3) 11 NC_015448.2 (53817627..53826054, complement)

Chromosome 11 - NC_015448.3Genomic Context describing neighboring genes Neighboring gene transmembrane protein 209 Neighboring gene isovaleryl-CoA dehydrogenase, mitochondrial Neighboring gene uncharacterized LOC101249148 Neighboring gene transfer RNA proline (anticodon AGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Knockout of Auxin Response Factor SlARF4 Improves Tomato Resistance to Water Deficit. Chen M, et al. Int J Mol Sci, 2021 Mar 25. PMID 33805879, Free PMC Article
  2. SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development. Sagar M, et al. Plant Physiol, 2013 Mar. PMID 23341361, Free PMC Article
  3. The Interaction between DELLA and ARF/IAA Mediates Crosstalk between Gibberellin and Auxin Signaling to Control Fruit Initiation in Tomato. Hu J, et al. Plant Cell, 2018 Aug. PMID 30008445, Free PMC Article
  4. Expressed sequence tags from the laboratory-grown miniature tomato (Lycopersicon esculentum) cultivar Micro-Tom and mining for single nucleotide polymorphisms and insertions/deletions in tomato cultivars. Yamamoto N, et al. Gene, 2005 Aug 15. PMID 15975739
  5. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Knockout of Auxin Response Factor SlARF4 Improves Tomato Resistance to Water Deficit.
    Title: Knockout of Auxin Response Factor SlARF4 Improves Tomato Resistance to Water Deficit.
  2. SlARF4 expression is high in pericarp tissues of immature fruit and then undergoes a dramatic decline at the onset of ripening concomitant with the increase in sugar content.
    Title: SlARF4, an auxin response factor involved in the control of sugar metabolism during tomato fruit development.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to hormone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
auxin response factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246842.2 → NP_001233771.1  auxin response factor 4

    See identical proteins and their annotated locations for NP_001233771.1

    Status: VALIDATED

    Source sequence(s)
    AEKE03003147, AK319275, BP891728, DQ340259
    UniProtKB/TrEMBL
    Q2LAI9
    Conserved Domains (2) summary
    pfam02362
    Location:176 → 277
    B3; B3 DNA binding domain
    pfam06507
    Location:302 → 383
    Auxin_resp; Auxin response factor

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015448.3 Reference SL3.0 Primary Assembly

    Range
    54112109..54120536 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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