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1700128F08Rik RIKEN cDNA 1700128F08 gene [ Mus musculus (house mouse) ]

Gene ID: 76669, updated on 8-Feb-2024

Summary

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Official Symbol
1700128F08Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700128F08 geneprovided by MGI
Gene description
U1-snRNP binding protein homolog pseudogene
Primary source
MGI:MGI:1923919
See related
Ensembl:ENSMUSG00000121852 AllianceGenome:MGI:1923919
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in central nervous system and sensory organ. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 1.2) See more
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Genomic context

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See 1700128F08Rik in Genome Data Viewer
Location:
9 A1; 9 2.46 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (8221890..8241988)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (8221889..8241987)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene centrosomal protein 126 Neighboring gene STARR-seq mESC enhancer starr_23241 Neighboring gene angiopoietin-related protein 5 pseudogene Neighboring gene predicted gene 7495 Neighboring gene microRNA 1899 Neighboring gene STARR-seq mESC enhancer starr_23245 Neighboring gene STARR-seq mESC enhancer starr_23246 Neighboring gene STARR-seq mESC enhancer starr_23247 Neighboring gene transient receptor potential cation channel, subfamily C, member 6 Neighboring gene STARR-seq mESC enhancer starr_23248 Neighboring gene STARR-seq mESC enhancer starr_23249 Neighboring gene predicted gene, 32014

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. McKee AE, et al. BMC Dev Biol, 2005 Jul 20. PMID 16033648, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • U1-snRNP binding protein homolog pseudogene
  • small nuclear ribonucleoprotein 35 (U11/U12) pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033618.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC155907, AK007310
    Related
    ENSMUST00000034483.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    8221890..8241988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_006500.1: Suppressed sequence

    Description
    NG_006500.1: This RefSeq was permanently suppressed because there is sufficient evidence that this locus is transcribed.

  2. NM_029697.1: Suppressed sequence

    Description
    NM_029697.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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