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1700018B08Rik RIKEN cDNA 1700018B08 gene [ Mus musculus (house mouse) ]

Gene ID: 76405, updated on 5-Mar-2024

Summary

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Official Symbol
1700018B08Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700018B08 geneprovided by MGI
Primary source
MGI:MGI:1923655
See related
Ensembl:ENSMUSG00000031809 AllianceGenome:MGI:1923655
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700084O22Rik
Summary
Orthologous to human C16orf95 (chromosome 16 open reading frame 95). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 90.3) See more
Orthologs
human all
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Genomic context

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Location:
8 E1; 8 70.64 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (122257515..122271077, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (121530776..121544339, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 26747 Neighboring gene predicted gene, 53465 Neighboring gene RIKEN cDNA 1700030M09 gene Neighboring gene F-box protein 31 Neighboring gene STARR-positive B cell enhancer ABC_E2276

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C16orf95 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357259.1 → NP_001344188.1  uncharacterized protein C16orf95 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 5' coding region and initiates translation at an alternate start codon compared to variant 1. The encoded isoform (2) has a distinct, shorter N-terminus than isoform 1.
    Source sequence(s)
    AC122205, AK006079, BC172077
    Conserved Domains (1) summary
    pfam15132
    Location:23 → 208
    DUF4568; Domain of unknown function (DUF4568)

  2. NM_001357260.1 → NP_001344189.1  uncharacterized protein C16orf95 homolog isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses two alternate splice sites in the 5' region and initiates translation at a downstream start codon compared to variant 1. The encoded isoform (3) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AC122205, AK006079, BC172082
    Conserved Domains (1) summary
    pfam15132
    Location:1 → 136
    DUF4568; Domain of unknown function (DUF4568)

  3. NM_001382230.1 → NP_001369159.1  uncharacterized protein C16orf95 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122205
    UniProtKB/TrEMBL
    S4R173
    Conserved Domains (1) summary
    pfam15132
    Location:30 → 227
    DUF4568; Domain of unknown function (DUF4568)

  4. NM_001382231.1 → NP_001369160.1  uncharacterized protein C16orf95 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122205
    UniProtKB/TrEMBL
    S4R173
    Related
    ENSMUSP00000138106.2, ENSMUST00000182460.2
    Conserved Domains (1) summary
    pfam15132
    Location:30 → 227
    DUF4568; Domain of unknown function (DUF4568)

  5. NM_001382232.1 → NP_001369161.1  uncharacterized protein C16orf95 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122205
    UniProtKB/TrEMBL
    S4R173
    Conserved Domains (1) summary
    pfam15132
    Location:30 → 227
    DUF4568; Domain of unknown function (DUF4568)

  6. NM_001382233.1 → NP_001369162.1  uncharacterized protein C16orf95 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC122205
    UniProtKB/TrEMBL
    S4R173
    Conserved Domains (1) summary
    pfam15132
    Location:30 → 227
    DUF4568; Domain of unknown function (DUF4568)

  7. NM_029597.2 → NP_083873.1  uncharacterized protein C16orf95 homolog isoform 1

    See identical proteins and their annotated locations for NP_083873.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AK006079, BY448457
    Consensus CDS
    CCDS52692.1
    UniProtKB/TrEMBL
    Q9DA83
    Related
    ENSMUSP00000034265.4, ENSMUST00000034265.11
    Conserved Domains (1) summary
    pfam15132
    Location:26 → 213
    DUF4568; Domain of unknown function (DUF4568)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    122257515..122271077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011248543.3 → XP_011246845.1  uncharacterized protein C16orf95 homolog isoform X3

    Conserved Domains (1) summary
    pfam15132
    Location:1 → 186
    DUF4568; Domain of unknown function (DUF4568)

  2. XM_006531475.4 → XP_006531538.1  uncharacterized protein C16orf95 homolog isoform X2

    Conserved Domains (1) summary
    pfam15132
    Location:30 → 227
    DUF4568; Domain of unknown function (DUF4568)

  3. XM_006531474.4 → XP_006531537.1  uncharacterized protein C16orf95 homolog isoform X1

    Conserved Domains (1) summary
    pfam15132
    Location:52 → 249
    DUF4568; Domain of unknown function (DUF4568)
Nucleotide Protein Strain
Heading Accession and Version

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