U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Vmn2r-ps54 vomeronasal 2, receptor, pseudogene 54 [ Mus musculus (house mouse) ]

Gene ID: 75835, updated on 8-Feb-2024

Summary

Official Symbol
Vmn2r-ps54provided by MGI
Official Full Name
vomeronasal 2, receptor, pseudogene 54provided by MGI
Primary source
MGI:MGI:1351350
See related
Ensembl:ENSMUSG00000121286 AllianceGenome:MGI:1351350
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm10948; Casr-rs5; Gprc2a-rs5; 1700108E19Rik; 4930562N12Rik
Expression
Biased expression in testis adult (RPKM 2.4), genital fat pad adult (RPKM 0.7) and 2 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
7 B3; 7 28.25 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (41317438..41376617)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (41668014..41727193)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:48888363-48888572 Neighboring gene predicted gene, 51480 Neighboring gene zinc finger protein 788 Neighboring gene STARR-seq mESC enhancer starr_18734 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene CTD nuclear envelope phosphatase 1 pseudogene Neighboring gene Cd9 antigen, pseudogene Neighboring gene vomeronasal 2, receptor, pseudogene 55 Neighboring gene vomeronasal 2, receptor, pseudogene 56 Neighboring gene STARR-seq mESC enhancer starr_18735 Neighboring gene vomeronasal 2, receptor 58

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from PubChem

General gene information

Markers

Other Names

  • G protein-coupled receptor, family C, group 2, member A, related sequence 5
  • calcium sensing receptor, related sequence 5
  • vomeronasal 2, receptor 57 pseudogene

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_004441.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108827
    Related
    ENSMUST00000150147.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    41317438..41376617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_019244.1: Suppressed sequence

    Description
    NG_019244.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
  2. NM_029460.2: Suppressed sequence

    Description
    NM_029460.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.