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Erich6b glutamate rich 6B [ Mus musculus (house mouse) ]

Gene ID: 75272, updated on 5-Mar-2024

Summary

Official Symbol
Erich6bprovided by MGI
Official Full Name
glutamate rich 6Bprovided by MGI
Primary source
MGI:MGI:1922522
See related
Ensembl:ENSMUSG00000022002 AllianceGenome:MGI:1922522
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm46471; 4930564B18Rik
Summary
Orthologous to human ERICH6B (glutamate rich 6B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 1.1) and kidney adult (RPKM 0.3) See more
Orthologs
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Genomic context

See Erich6b in Genome Data Viewer
Location:
14 D3; 14 40.28 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (75879662..75934165)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (75642222..75696725)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36060 Neighboring gene chibby family member 2 Neighboring gene predicted gene, 36219 Neighboring gene predicted gene, 23622 Neighboring gene component of oligomeric golgi complex 3 Neighboring gene STARR-seq mESC enhancer starr_37146 Neighboring gene solute carrier family 25, member 30 Neighboring gene STARR-positive B cell enhancer ABC_E9050

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001369022.1NP_001355951.1  glutamate-rich protein 6B isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC122285, AC125205
    Consensus CDS
    CCDS88716.1
    UniProtKB/TrEMBL
    A0A571BEV3
    Related
    ENSMUSP00000158673.2, ENSMUST00000238633.2
    Conserved Domains (1) summary
    pfam14977
    Location:352547
    FAM194; FAM194 protein
  2. NM_029230.1NP_083506.1  glutamate-rich protein 6B isoform 2

    See identical proteins and their annotated locations for NP_083506.1

    Status: VALIDATED

    Source sequence(s)
    AK016216
    Consensus CDS
    CCDS56969.1
    UniProtKB/TrEMBL
    Q9D4S6
    Related
    ENSMUSP00000022579.2, ENSMUST00000022579.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    75879662..75934165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)