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Tmem269 transmembrane protein 269 [ Mus musculus (house mouse) ]

Gene ID: 75180, updated on 5-Mar-2024

Summary

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Official Symbol
Tmem269provided by MGI
Official Full Name
transmembrane protein 269provided by MGI
Primary source
MGI:MGI:1922430
See related
Ensembl:ENSMUSG00000028642 AllianceGenome:MGI:1922430
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930538K18Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM269 (transmembrane protein 269). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 19.0) and frontal lobe adult (RPKM 0.4) See more
Orthologs
human all
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Genomic context

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See Tmem269 in Genome Data Viewer
Location:
4 D2.1; 4 55.34 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (119062209..119075754, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (119205012..119218557, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene erythroblast membrane-associated protein Neighboring gene small vasohibin binding protein Neighboring gene expressed sequence AU022252 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:118905472-118905581 Neighboring gene STARR-positive B cell enhancer ABC_E4654 Neighboring gene prolyl 3-hydroxylase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transmembrane protein 269

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029198.3 → NP_083474.1  transmembrane protein 269

    See identical proteins and their annotated locations for NP_083474.1

    Status: PROVISIONAL

    Source sequence(s)
    AL606975
    Consensus CDS
    CCDS18574.1
    UniProtKB/Swiss-Prot
    Q9D4Y8
    UniProtKB/TrEMBL
    Q80ZQ6
    Related
    ENSMUSP00000148286.2, ENSMUST00000212054.2
    Conserved Domains (1) summary
    TIGR04217
    Location:36 → 242
    archae_ser_T; archaetidylserine synthase

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    119062209..119075754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030253868.1 → XP_030109728.1  transmembrane protein 269 isoform X4

    UniProtKB/TrEMBL
    F6SIZ7
    Conserved Domains (1) summary
    COG1183
    Location:1 → 167
    PssA; Phosphatidylserine synthase [Lipid transport and metabolism]

  2. XM_006503456.2 → XP_006503519.1  transmembrane protein 269 isoform X3

    UniProtKB/TrEMBL
    Q80ZQ6

  3. XM_006503455.3 → XP_006503518.1  transmembrane protein 269 isoform X2

    See identical proteins and their annotated locations for XP_006503518.1

    UniProtKB/TrEMBL
    Q80ZQ6
    Related
    ENSMUSP00000030394.4, ENSMUST00000030394.3
    Conserved Domains (1) summary
    COG1183
    Location:20 → 214
    PssA; Phosphatidylserine synthase [Lipid transport and metabolism]

  4. XM_036164511.1 → XP_036020404.1  transmembrane protein 269 isoform X1

    UniProtKB/Swiss-Prot
    Q9D4Y8
    UniProtKB/TrEMBL
    Q80ZQ6
    Conserved Domains (1) summary
    TIGR04217
    Location:36 → 242
    archae_ser_T; archaetidylserine synthase

  5. XM_011240628.4 → XP_011238930.1  transmembrane protein 269 isoform X2

    See identical proteins and their annotated locations for XP_011238930.1

    UniProtKB/TrEMBL
    Q80ZQ6
    Conserved Domains (1) summary
    COG1183
    Location:20 → 214
    PssA; Phosphatidylserine synthase [Lipid transport and metabolism]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4Y8.1 GenPept UniProtKB/Swiss-Prot:Q9D4Y8

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