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soul3 heme-binding protein soul3 [ Danio rerio (zebrafish) ]

Gene ID: 751688, updated on 27-Mar-2024

Summary

Official Symbol
soul3provided by ZNC
Official Full Name
heme-binding protein soul3provided by ZNC
Primary source
ZFIN:ZDB-GENE-060825-287
See related
Ensembl:ENSDARG00000102257 AllianceGenome:ZFIN:ZDB-GENE-060825-287
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153411
Summary
Predicted to enable heme binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 17
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (660125..681142, complement)
105 previous assembly GRCz10 (GCF_000002035.5) Unplaced Scaffold NW_003336606.2 (2638..23655, complement)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene FA complementation group M Neighboring gene solute carrier family 25 member 29 Neighboring gene solute carrier family 25 member 47b Neighboring gene tryptophanyl-tRNA synthetase

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC153411

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables heme binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045401.1NP_001038866.1  heme-binding protein soul3

    See identical proteins and their annotated locations for NP_001038866.1

    Status: PROVISIONAL

    Source sequence(s)
    BC122277
    UniProtKB/TrEMBL
    Q0P449
    Related
    ENSDARP00000140711.1, ENSDART00000165583.2
    Conserved Domains (1) summary
    pfam04832
    Location:67222
    SOUL; SOUL heme-binding protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    660125..681142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)