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Cfap210 cilia and flagella associated protein 210 [ Mus musculus (house mouse) ]

Gene ID: 75051, updated on 12-Mar-2024

Summary

Official Symbol
Cfap210provided by MGI
Official Full Name
cilia and flagella associated protein 210provided by MGI
Primary source
MGI:MGI:1923100
See related
Ensembl:ENSMUSG00000070883 AllianceGenome:MGI:1923100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ccdc173; 4930525K21Rik; 4930578N16Rik
Summary
Orthologous to human CFAP210 (cilia and flagella associated protein 210). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 3.4), CNS E11.5 (RPKM 1.2) and 8 other tissues See more
Orthologs
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Genomic context

Location:
2 C2; 2 40.95 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (69587736..69619873, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (69757392..69789617, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene FAST kinase domains 1 Neighboring gene STARR-seq mESC enhancer starr_04743 Neighboring gene STARR-positive B cell enhancer ABC_E10110 Neighboring gene peptidyl-prolyl isomerase G (cyclophilin G) Neighboring gene STARR-positive B cell enhancer mm9_chr2:69582878-69583179 Neighboring gene 60S ribosomal protein L13-like Neighboring gene STARR-seq mESC enhancer starr_04744 Neighboring gene STARR-positive B cell enhancer ABC_E4461 Neighboring gene phosphatase, orphan 2 Neighboring gene predicted gene 13624

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in axonemal B tubule inner sheath IDA
Inferred from Direct Assay
more info
PubMed 
is_active_in axonemal microtubule IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in axonemal microtubule ISO
Inferred from Sequence Orthology
more info
 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
is_active_in cellular_component ND
No biological Data available
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cilia- and flagella- associated protein 210
Names
coiled-coil domain containing 173
coiled-coil domain-containing protein 173
protein CFAP210

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077684.2NP_001071152.1  cilia- and flagella- associated protein 210 isoform 1

    See identical proteins and their annotated locations for NP_001071152.1

    Status: VALIDATED

    Source sequence(s)
    AL845261
    Consensus CDS
    CCDS38138.1
    UniProtKB/Swiss-Prot
    A0JLY1
    UniProtKB/TrEMBL
    B7ZN54
    Related
    ENSMUSP00000092548.4, ENSMUST00000094942.4
    Conserved Domains (1) summary
    pfam13868
    Location:142466
    TPH; Trichohyalin-plectin-homology domain
  2. NM_001418782.1NP_001405711.1  cilia- and flagella- associated protein 210 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL845261

RNA

  1. NR_184817.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL845261
  2. NR_184818.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL845261

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    69587736..69619873 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239823.1XP_011238125.1  cilia- and flagella- associated protein 210 isoform X1

    See identical proteins and their annotated locations for XP_011238125.1

    Conserved Domains (1) summary
    pfam13868
    Location:62295
    TPH; Trichohyalin-plectin-homology domain
  2. XM_006500324.3XP_006500387.1  cilia- and flagella- associated protein 210 isoform X2

    Conserved Domains (1) summary
    pfam13868
    Location:1230
    TPH; Trichohyalin-plectin-homology domain
  3. XM_006500322.3XP_006500385.1  cilia- and flagella- associated protein 210 isoform X1

    See identical proteins and their annotated locations for XP_006500385.1

    Conserved Domains (1) summary
    pfam13868
    Location:62295
    TPH; Trichohyalin-plectin-homology domain
  4. XM_006500325.5XP_006500388.1  cilia- and flagella- associated protein 210 isoform X3