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Mfsd13b major facilitator superfamily domain containing 13B [ Mus musculus (house mouse) ]

Gene ID: 74466, updated on 8-Feb-2024

Summary

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Official Symbol
Mfsd13bprovided by MGI
Official Full Name
major facilitator superfamily domain containing 13Bprovided by MGI
Primary source
MGI:MGI:1921716
See related
Ensembl:ENSMUSG00000030877 AllianceGenome:MGI:1921716
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4933427G17Rik
Summary
Orthologous to human MFSD13B (major facilitator superfamily domain containing 13B (pseudogene)). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 30.5) See more
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Genomic context

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Location:
7 F2; 7 65.06 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (120581664..120614670)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (120982442..121015000)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6593 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide E Neighboring gene cerebellar degeneration-related 2 Neighboring gene STARR-positive B cell enhancer ABC_E450 Neighboring gene predicted pseudogene 9234 Neighboring gene STARR-positive B cell enhancer ABC_E4973 Neighboring gene predicted gene, 25924 Neighboring gene methyltransferase like 9 Neighboring gene 60S ribosomal protein L32 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC74466

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374644.1 → NP_001361573.1  uncharacterized protein LOC74466 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC122248
    Consensus CDS
    CCDS90323.1
    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  2. NM_028955.1 → NP_083231.1  uncharacterized protein LOC74466 isoform 2

    See identical proteins and their annotated locations for NP_083231.1

    Status: VALIDATED

    Source sequence(s)
    AC122248, AK016951
    Consensus CDS
    CCDS52384.1
    UniProtKB/TrEMBL
    Q9D3Y2
    Related
    ENSMUSP00000033166.4, ENSMUST00000033166.10
    Conserved Domains (1) summary
    cl28910
    Location:12 → 448
    MFS; Major Facilitator Superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    120581664..120614670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243042.2 → XP_030098902.1  uncharacterized protein LOC74466 isoform X6

    Conserved Domains (1) summary
    cl28910
    Location:12 → 290
    MFS; Major Facilitator Superfamily

  2. XM_006508267.5 → XP_006508330.1  uncharacterized protein LOC74466 isoform X5

    Conserved Domains (1) summary
    cl28910
    Location:12 → 290
    MFS; Major Facilitator Superfamily

  3. XM_006508268.5 → XP_006508331.1  uncharacterized protein LOC74466 isoform X6

    Conserved Domains (1) summary
    cl28910
    Location:12 → 290
    MFS; Major Facilitator Superfamily

  4. XM_006508266.4 → XP_006508329.1  uncharacterized protein LOC74466 isoform X4

    See identical proteins and their annotated locations for XP_006508329.1

    Conserved Domains (1) summary
    cl28910
    Location:12 → 420
    MFS; Major Facilitator Superfamily

  5. XM_006508269.4 → XP_006508332.1  uncharacterized protein LOC74466 isoform X7

    Conserved Domains (1) summary
    cl28910
    Location:12 → 290
    MFS; Major Facilitator Superfamily

  6. XM_006508270.4 → XP_006508333.1  uncharacterized protein LOC74466 isoform X8

    Conserved Domains (1) summary
    cl28910
    Location:12 → 290
    MFS; Major Facilitator Superfamily

  7. XM_006508265.4 → XP_006508328.1  uncharacterized protein LOC74466 isoform X3

    Conserved Domains (1) summary
    cl28910
    Location:12 → 421
    MFS; Major Facilitator Superfamily

  8. XM_030243041.1 → XP_030098901.1  uncharacterized protein LOC74466 isoform X2

    UniProtKB/TrEMBL
    Q9D3Y2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 448
    MFS; Major Facilitator Superfamily

  9. XM_006508264.5 → XP_006508327.1  uncharacterized protein LOC74466 isoform X2

    See identical proteins and their annotated locations for XP_006508327.1

    UniProtKB/TrEMBL
    Q9D3Y2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 448
    MFS; Major Facilitator Superfamily

  10. XM_017312355.2 → XP_017167844.1  uncharacterized protein LOC74466 isoform X1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  11. XM_006508257.4 → XP_006508320.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508320.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  12. XM_006508259.4 → XP_006508322.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508322.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  13. XM_006508255.4 → XP_006508318.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508318.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  14. XM_006508261.4 → XP_006508324.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508324.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Related
    ENSMUSP00000150654.2, ENSMUST00000216241.2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  15. XM_006508262.4 → XP_006508325.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508325.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  16. XM_006508256.4 → XP_006508319.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508319.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  17. XM_006508254.4 → XP_006508317.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508317.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  18. XM_006508263.4 → XP_006508326.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508326.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily

  19. XM_006508258.4 → XP_006508321.1  uncharacterized protein LOC74466 isoform X1

    See identical proteins and their annotated locations for XP_006508321.1

    UniProtKB/TrEMBL
    A0A1L1SUA2
    Conserved Domains (1) summary
    cl28910
    Location:12 → 449
    MFS; Major Facilitator Superfamily
Nucleotide Protein Strain
Heading Accession and Version

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