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ARFIP1 ADP ribosylation factor interacting protein 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 742995, updated on 29-Mar-2024

Summary

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Official Symbol
ARFIP1provided by VGNC
Official Full Name
ADP ribosylation factor interacting protein 1provided by VGNC
Primary source
VGNC:VGNC:2946
Locus tag
CK820_G0016955
See related
Ensembl:ENSPTRG00000016519
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (154559492..154691386)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (154511316..154650788)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein eS1-like Neighboring gene transmembrane protein 154 Neighboring gene ribosome biogenesis protein NSA2 homolog Neighboring gene tigger transposable element derived 4 Neighboring gene PSME3-interacting protein Neighboring gene FH2 domain containing 1 Neighboring gene tripartite motif containing 2 Neighboring gene uncharacterized LOC129143783

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phospholipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Arp2/3 complex-mediated actin nucleation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in trans-Golgi network membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arfaptin-1
Names
ADP-ribosylation factor interacting protein 1 (arfaptin 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    154559492..154691386
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009448419.4 → XP_009446694.1  arfaptin-1 isoform X2

    See identical proteins and their annotated locations for XP_009446694.1

    UniProtKB/TrEMBL
    A0A2J8MUM7, A0A6D2WTC9, K7AE20
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_009448418.5 → XP_009446693.1  arfaptin-1 isoform X2

    See identical proteins and their annotated locations for XP_009446693.1

    UniProtKB/TrEMBL
    A0A2J8MUM7, A0A6D2WTC9, K7AE20
    Related
    ENSPTRP00000073987.1
    Conserved Domains (1) summary
    cd07660
    Location:123 → 323
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_009448416.5 → XP_009446691.1  arfaptin-1 isoform X1

    See identical proteins and their annotated locations for XP_009446691.1

    UniProtKB/TrEMBL
    A0A2J8MUN5, A0A6D2VVR2, H2QQA4
    Related
    ENSPTRP00000028360.2
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_009448417.4 → XP_009446692.1  arfaptin-1 isoform X1

    See identical proteins and their annotated locations for XP_009446692.1

    UniProtKB/TrEMBL
    A0A2J8MUN5, A0A6D2VVR2, H2QQA4
    Conserved Domains (1) summary
    cd07660
    Location:155 → 355
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  5. XM_054683432.2 → XP_054539407.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MUM7, A0A6D2WTC9, K7AE20

  6. XM_054683430.2 → XP_054539405.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MUN5, A0A6D2VVR2, H2QQA4

  7. XM_054683431.2 → XP_054539406.1  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MUM7, A0A6D2WTC9, K7AE20

  8. XM_054683429.2 → XP_054539404.1  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MUN5, A0A6D2VVR2, H2QQA4

RNA

  1. XR_010156361.1 RNA Sequence

  2. XR_010156359.1 RNA Sequence

  3. XR_010156360.1 RNA Sequence

Nucleotide Protein
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