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Ankrd40 ankyrin repeat domain 40 [ Mus musculus (house mouse) ]

Gene ID: 71452, updated on 5-Mar-2024

Summary

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Official Symbol
Ankrd40provided by MGI
Official Full Name
ankyrin repeat domain 40provided by MGI
Primary source
MGI:MGI:1918702
See related
Ensembl:ENSMUSG00000020864 AllianceGenome:MGI:1918702
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gcap15; 1110011C06Rik; 5530600A18Rik
Summary
Is expressed in genitourinary system. Orthologous to human ANKRD40 (ankyrin repeat domain 40). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in cerebellum adult (RPKM 37.5), lung adult (RPKM 34.2) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Ankrd40 in Genome Data Viewer
Location:
11 D; 11 58.9 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94218827..94232673)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94328001..94341847)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene ANKRD40 C-terminal like Neighboring gene LUC7-like 3 (S. cerevisiae) Neighboring gene STARR-positive B cell enhancer ABC_E5270 Neighboring gene STARR-positive B cell enhancer ABC_E7046 Neighboring gene ATP-binding cassette, sub-family C member 3 Neighboring gene predicted gene, 51871 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:94235659-94235882 Neighboring gene STARR-seq mESC enhancer starr_30466 Neighboring gene STARR-seq mESC enhancer starr_30467 Neighboring gene calcium channel, voltage-dependent, T type, alpha 1G subunit Neighboring gene predicted gene, 51872

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. T-box transcription factor 3 governs a transcriptional program for the function of the mouse atrioventricular conduction system. Mohan RA, et al. Proc Natl Acad Sci U S A, 2020 Aug 4. PMID 32675240, Free PMC Article
  2. Novel cDNA clones obtained by antibody screening of a mouse cerebellar cDNA expression library. Kambouris M, et al. Brain Res Mol Brain Res, 1994 Sep. PMID 7808216
  3. Construction of long-transcript enriched cDNA libraries from submicrogram amounts of total RNAs by a universal PCR amplification method. Piao Y, et al. Genome Res, 2001 Sep. PMID 11544199, Free PMC Article
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • MGC29030

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 40
Names
granule cell antiserum positive 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027799.2 → NP_082075.2  ankyrin repeat domain-containing protein 40 isoform 1

    See identical proteins and their annotated locations for NP_082075.2

    Status: VALIDATED

    Source sequence(s)
    AL645965
    Consensus CDS
    CCDS25253.2
    UniProtKB/Swiss-Prot
    Q5SUE8, Q5SUF0, Q8R595, Q9CU71
    Related
    ENSMUSP00000103448.3, ENSMUST00000107818.9
    Conserved Domains (4) summary
    cd00204
    Location:14 → 93
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:48 → 93
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:14 → 64
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:14 → 40
    ANK; ANK repeat [structural motif]

  2. NM_146024.1 → NP_666136.1  ankyrin repeat domain-containing protein 40 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK017451, AL645965, CN835214
    Consensus CDS
    CCDS36283.1
    UniProtKB/Swiss-Prot
    Q5SUE8
    Related
    ENSMUSP00000021227.6, ENSMUST00000021227.6
    Conserved Domains (4) summary
    cd00204
    Location:14 → 93
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:48 → 93
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:14 → 64
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:14 → 40
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    94218827..94232673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5SUE8.1 GenPept UniProtKB/Swiss-Prot:Q5SUE8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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