U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

4921524L21Rik RIKEN cDNA 4921524L21 gene [ Mus musculus (house mouse) ]

Gene ID: 70901, updated on 8-Feb-2024

Summary

Go to the top of the page Help
Official Symbol
4921524L21Rikprovided by MGI
Official Full Name
RIKEN cDNA 4921524L21 geneprovided by MGI
Primary source
MGI:MGI:1918151
See related
Ensembl:ENSMUSG00000039540 AllianceGenome:MGI:1918151
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 5.5) See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
18 A1; 18 4.53 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (6603629..6638970)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (6603629..6638970)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene enhancer of polycomb homolog 1 Neighboring gene STARR-seq mESC enhancer starr_43717 Neighboring gene microRNA 1893 Neighboring gene STARR-seq mESC enhancer starr_43719 Neighboring gene charged multivesicular body protein 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_43721 Neighboring gene STARR-seq mESC enhancer starr_43722 Neighboring gene STARR-seq mESC enhancer starr_43723 Neighboring gene STARR-positive B cell enhancer ABC_E5647 Neighboring gene STARR-seq mESC enhancer starr_43725 Neighboring gene phosphoglycerate kinase 1 pseudogene Neighboring gene RAB18, member RAS oncogene family

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ankyrin repeat domain-containing protein 26

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362874.1 → NP_001349803.1  ankyrin repeat domain-containing protein 26 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC115302
    Consensus CDS
    CCDS89185.1
    UniProtKB/TrEMBL
    A0A3Q4EGB9, Q80W38
    Related
    ENSMUSP00000157133.2, ENSMUST00000234337.2
    Conserved Domains (1) summary
    pfam12001
    Location:79 → 129
    DUF3496; Domain of unknown function (DUF3496)

  2. NM_027598.2 → NP_081874.1  ankyrin repeat domain-containing protein 26 isoform 1

    See identical proteins and their annotated locations for NP_081874.1

    Status: VALIDATED

    Source sequence(s)
    AC115302
    Consensus CDS
    CCDS50216.1
    UniProtKB/TrEMBL
    Q80W38, Q9D5T2
    Related
    ENSMUSP00000035514.4, ENSMUST00000044829.5
    Conserved Domains (1) summary
    pfam12001
    Location:132 → 182
    DUF3496; Domain of unknown function (DUF3496)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    6603629..6638970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006526244.2 → XP_006526307.1  ankyrin repeat domain-containing protein 26 isoform X1

    UniProtKB/TrEMBL
    Q80W38
    Conserved Domains (1) summary
    pfam12001
    Location:109 → 159
    DUF3496; Domain of unknown function (DUF3496)

  2. XM_006526245.3 → XP_006526308.1  ankyrin repeat domain-containing protein 26 isoform X2

    UniProtKB/TrEMBL
    Q80W38
    Conserved Domains (1) summary
    pfam12001
    Location:28 → 78
    DUF3496; Domain of unknown function (DUF3496)

  3. XM_011247002.2 → XP_011245304.1  ankyrin repeat domain-containing protein 26 isoform X3

    See identical proteins and their annotated locations for XP_011245304.1

    Conserved Domains (1) summary
    pfam12001
    Location:1 → 49
    DUF3496; Domain of unknown function (DUF3496)

  4. XM_011247003.2 → XP_011245305.1  ankyrin repeat domain-containing protein 26 isoform X3

    See identical proteins and their annotated locations for XP_011245305.1

    Conserved Domains (1) summary
    pfam12001
    Location:1 → 49
    DUF3496; Domain of unknown function (DUF3496)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous