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Mkrn2os makorin, ring finger protein 2, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 70291, updated on 5-Mar-2024

Summary

Official Symbol
Mkrn2osprovided by MGI
Official Full Name
makorin, ring finger protein 2, opposite strandprovided by MGI
Primary source
MGI:MGI:1917541
See related
Ensembl:ENSMUSG00000068011 AllianceGenome:MGI:1917541
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510049J12Rik
Summary
Is expressed in retina. Orthologous to human MKRN2OS (MKRN2 opposite strand). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in large intestine adult (RPKM 21.9), small intestine adult (RPKM 16.2) and 9 other tissues See more
Orthologs
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Genomic context

Location:
6 E3; 6 53.6 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (115560508..115569537, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (115583547..115592576, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 36355 Neighboring gene tRNA splicing endonuclease subunit 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115510052-115510235 Neighboring gene STARR-seq mESC enhancer starr_17082 Neighboring gene STARR-positive B cell enhancer mm9_chr6:115533495-115533796 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115551710-115551893 Neighboring gene makorin, ring finger protein, 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:115570008-115570117 Neighboring gene v-raf-leukemia viral oncogene 1 Neighboring gene TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
MKRN2 opposite strand protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101431.1NP_001094901.1  MKRN2 opposite strand protein

    See identical proteins and their annotated locations for NP_001094901.1

    Status: VALIDATED

    Source sequence(s)
    AA277646, AA833313, AK028760
    Consensus CDS
    CCDS51877.1
    UniProtKB/TrEMBL
    D3Z393
    Related
    ENSMUSP00000108580.2, ENSMUST00000112957.2
    Conserved Domains (1) summary
    pfam16044
    Location:8199
    DUF4796; Domain of unknown function (DUF4796)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    115560508..115569537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)