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2610027F03Rik RIKEN cDNA 2610027F03 gene [ Mus musculus (house mouse) ]

Gene ID: 69904, updated on 8-Feb-2024

Summary

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Official Symbol
2610027F03Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610027F03 geneprovided by MGI
Primary source
MGI:MGI:1917154
See related
AllianceGenome:MGI:1917154
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in CNS E11.5 (RPKM 1.0), CNS E14 (RPKM 0.5) and 1 other tissue See more
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Genomic context

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See 2610027F03Rik in Genome Data Viewer
Location:
1; 1 E2.3
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (120542383..120691296)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (120614654..120763567)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_02064 Neighboring gene predicted gene, 41939 Neighboring gene predicted gene, 34352 Neighboring gene engrailed 1 Neighboring gene STARR-seq mESC enhancer starr_02065 Neighboring gene STARR-seq mESC enhancer starr_02066 Neighboring gene STARR-seq mESC enhancer starr_02068 Neighboring gene STARR-seq mESC enhancer starr_02069 Neighboring gene predicted gene 29345 Neighboring gene predicted gene, 34584

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. LncRNA XR_001779380 Primes Epithelial Cells for IFN-γ-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense. Gong AY, et al. mBio, 2021 Oct 26. PMID 34488445, Free PMC Article
  2. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LncRNA XR_001779380 Primes Epithelial Cells for IFN-gamma-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense.
    Title: LncRNA XR_001779380 Primes Epithelial Cells for IFN-γ-Mediated Gene Transcription and Facilitates Age-Dependent Intestinal Antimicrobial Defense.
Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    120542383..120691296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_878468.2 RNA Sequence

  2. XR_878474.2 RNA Sequence

  3. XR_387323.3 RNA Sequence

  4. XR_387328.3 RNA Sequence

  5. XR_387331.3 RNA Sequence

  6. XR_001779381.2 RNA Sequence

  7. XR_387329.3 RNA Sequence

  8. XR_001779383.1 RNA Sequence

  9. XR_001779384.1 RNA Sequence

  10. XR_387324.2 RNA Sequence

  11. XR_878477.3 RNA Sequence

  12. XR_387332.2 RNA Sequence

  13. XR_001779380.1 RNA Sequence

  14. XR_004936316.1 RNA Sequence

  15. XR_001779385.1 RNA Sequence

  16. XR_004936315.1 RNA Sequence

  17. XR_004936317.1 RNA Sequence

  18. XR_001779379.1 RNA Sequence

  19. XR_001779376.1 RNA Sequence

  20. XR_001779387.1 RNA Sequence

  21. XR_001779386.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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