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Zfp688 zinc finger protein 688 [ Mus musculus (house mouse) ]

Gene ID: 69234, updated on 5-Mar-2024

Summary

Official Symbol
Zfp688provided by MGI
Official Full Name
zinc finger protein 688provided by MGI
Primary source
MGI:MGI:1916484
See related
Ensembl:ENSMUSG00000045251 AllianceGenome:MGI:1916484
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810407K09Rik
Summary
Is expressed in several structures, including brain; genitourinary system; and retina nuclear layer. Orthologous to human ZNF688 (zinc finger protein 688). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in testis adult (RPKM 4.7), spleen adult (RPKM 4.4) and 28 other tissues See more
Orthologs
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Genomic context

Location:
7 F3; 7 69.51 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127018138..127023786, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127418963..127423241, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 764 Neighboring gene SMT3 suppressor of mif two 3 homolog 2, pseudogene 2 (S. cerevisiae) Neighboring gene myeloma-overexpressed gene 2 protein homolog Neighboring gene STARR-seq mESC enhancer starr_20181 Neighboring gene RIKEN cDNA B130055M24 gene Neighboring gene STARR-positive B cell enhancer ABC_E1095 Neighboring gene zinc finger protein 689 Neighboring gene STARR-seq mESC enhancer starr_20182 Neighboring gene STARR-seq mESC enhancer starr_20183 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:134614302-134614485 Neighboring gene STARR-positive B cell enhancer ABC_E1742 Neighboring gene proline rich 14 Neighboring gene fibrosin

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC41678

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026999.4NP_081275.3  zinc finger protein 688

    Status: VALIDATED

    Source sequence(s)
    AI447502, BC038680, BQ550868, DV654233
    Consensus CDS
    CCDS21866.2
    UniProtKB/TrEMBL
    E9Q5M9
    Related
    ENSMUSP00000101907.2, ENSMUST00000106300.2
    Conserved Domains (6) summary
    smart00349
    Location:2686
    KRAB; krueppel associated box
    COG5048
    Location:166233
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:183203
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:181203
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:2665
    KRAB; KRAB box
    pfam13465
    Location:196220
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    127018138..127023786 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508179.5XP_006508242.1  zinc finger protein 688 isoform X1

    Conserved Domains (4) summary
    sd00017
    Location:145165
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:143165
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:2566
    KRAB; KRAB box
    pfam13465
    Location:158182
    zf-H2C2_2; Zinc-finger double domain
  2. XM_017312285.3XP_017167774.1  zinc finger protein 688 isoform X2

    UniProtKB/TrEMBL
    Q8K184
    Conserved Domains (3) summary
    sd00017
    Location:106126
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:104126
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:119143
    zf-H2C2_2; Zinc-finger double domain
  3. XM_011241892.4XP_011240194.1  zinc finger protein 688 isoform X2

    UniProtKB/TrEMBL
    Q8K184
    Conserved Domains (3) summary
    sd00017
    Location:106126
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:104126
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:119143
    zf-H2C2_2; Zinc-finger double domain