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Tvp23b trans-golgi network vesicle protein 23B [ Mus musculus (house mouse) ]

Gene ID: 67510, updated on 11-Apr-2024

Summary

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Official Symbol
Tvp23bprovided by MGI
Official Full Name
trans-golgi network vesicle protein 23Bprovided by MGI
Primary source
MGI:MGI:1914760
See related
Ensembl:ENSMUSG00000014177 AllianceGenome:MGI:1914760
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam18b; Fam18b1; 1810036I24Rik
Summary
Predicted to be involved in protein secretion and vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in lung. Orthologous to several human genes including TVP23B (trans-golgi network vesicle protein 23 homolog B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in bladder adult (RPKM 15.5), placenta adult (RPKM 15.2) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Tvp23b in Genome Data Viewer
Location:
11 B2; 11 38.81 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (62770281..62786012)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (62879455..62895186)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene tripartite motif-containing 16 Neighboring gene STARR-seq mESC enhancer starr_29718 Neighboring gene F-box and WD-40 domain protein 10 Neighboring gene STARR-seq mESC enhancer starr_29719 Neighboring gene STARR-positive B cell enhancer ABC_E1826 Neighboring gene trans-golgi network vesicle protein 23B, opposite strand Neighboring gene predicted gene, 36614

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Trans-Golgi protein TVP23B regulates host-microbe interactions via Paneth cell homeostasis and Goblet cell glycosylation. Song R, et al. Nat Commun, 2023 Jun 20. PMID 37339972, Free PMC Article
  2. Evolution of mammalian chitinase(-like) members of family 18 glycosyl hydrolases. Bussink AP, et al. Genetics, 2007 Oct. PMID 17720922, Free PMC Article
  3. Construction of a multi-functional cDNA library specific for mouse pancreatic islets and its application to microarray. Nishimura M, et al. DNA Res, 2004 Oct 31. PMID 15747579
  4. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Trans-Golgi protein TVP23B regulates host-microbe interactions via Paneth cell homeostasis and Goblet cell glycosylation.
    Title: Trans-Golgi protein TVP23B regulates host-microbe interactions via Paneth cell homeostasis and Goblet cell glycosylation.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Golgi apparatus membrane protein TVP23 homolog B
Names
family with sequence similarity 18, member B
ortholog of human family with sequence similarity 18 member B FAM18B
protein FAM18B1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356520.1 → NP_001343449.1  Golgi apparatus membrane protein TVP23 homolog B isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two consecutive alternate in-frame exons in the 3' coding region, compared to variant 1. It encodes isoform 2, which lacks an internal segment and is shorter, compared to isoform 1.
    Source sequence(s)
    AK007707, AK050027, AK077277, BP757155, CK334592
    Conserved Domains (1) summary
    pfam05832
    Location:32 → 130
    DUF846; Eukaryotic protein of unknown function (DUF846)

  2. NM_001356521.1 → NP_001343450.1  Golgi apparatus membrane protein TVP23 homolog B isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and 5' coding region, uses a downstream start codon and lacks an alternate in-frame exon in the 3' coding region, compared to variant 1. It encodes isoform 3, which is shorter than isoform 1.
    Source sequence(s)
    AK007707, AK050027, BP757155, BY113761
    Conserved Domains (1) summary
    pfam05832
    Location:1 → 110
    DUF846; Eukaryotic protein of unknown function (DUF846)

  3. NM_026210.5 → NP_080486.1  Golgi apparatus membrane protein TVP23 homolog B isoform 1

    See identical proteins and their annotated locations for NP_080486.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK007707, AK050027, AK150936, BP757155
    Consensus CDS
    CCDS24834.1
    UniProtKB/Swiss-Prot
    Q3UBJ3, Q9D8T4
    Related
    ENSMUSP00000014321.5, ENSMUST00000014321.5
    Conserved Domains (1) summary
    pfam05832
    Location:32 → 174
    DUF846; Eukaryotic protein of unknown function (DUF846)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    62770281..62786012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D8T4.1 GenPept UniProtKB/Swiss-Prot:Q9D8T4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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