Pudp pseudouridine 5'-phosphatase [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Pudpprovided by MGI
Official Full Name: pseudouridine 5'-phosphataseprovided by MGI
Primary source: MGI:MGI:1914615
See related: Ensembl:ENSMUSG00000048875 AllianceGenome:MGI:1914615
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: GS1; Hdhd1; Hdhd1a; 1700121L12Rik
Summary: Predicted to enable phosphatase activity. Predicted to act upstream of or within nucleotide metabolic process. Is expressed in pituitary gland and testis. Orthologous to human PUDP (pseudouridine 5'-phosphatase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human all
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Genomic context

Location:: 18 D1; 18 27.32 cM

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	18	NC_000084.7 (50700727..50701770, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	18	NC_000084.6 (50567656..50568699, complement)

Chromosome 18 - NC_000084.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Targeted (2)
Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables hydrolase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables phosphatase activity	IBA Inferred from Biological aspect of Ancestor more info
enables pseudouridine 5'-phosphatase activity	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within nucleotide metabolic process	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: pseudouridine-5'-phosphatase

Names: 5'-PsiMPase; haloacid dehalogenase-like hydrolase domain containing 1A; haloacid dehalogenase-like hydrolase domain-containing protein 1; haloacid dehalogenase-like hydrolase domain-containing protein 1A; pseudouridine 5-phosphatase; pseudouridine-5'-monophosphatase

NP_080384.2

EC 3.1.3.96

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_026108.3 → NP_080384.2 pseudouridine-5'-phosphatase

See identical proteins and their annotated locations for NP_080384.2

Status: VALIDATED

Source sequence(s)

AK014922, CN834894

Consensus CDS

CCDS29244.1

UniProtKB/Swiss-Prot

Q5RL33, Q9D5U5, Q9D9A0

UniProtKB/TrEMBL

A0A0C3SFZ4

Related

ENSMUSP00000057378.3, ENSMUST00000056460.4

Conserved Domains (2) summary

TIGR02009
Location:16 → 199

PGMB-YQAB-SF; beta-phosphoglucomutase family hydrolase

cl21460
Location:20 → 233

HAD_like; Haloacid Dehalogenase-like Hydrolases