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BMP1 bone morphogenetic protein 1 [ Homo sapiens (human) ]

Gene ID: 649, updated on 5-Mar-2024

Summary

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Official Symbol
BMP1provided by HGNC
Official Full Name
bone morphogenetic protein 1provided by HGNC
Primary source
HGNC:HGNC:1067
See related
Ensembl:ENSG00000168487 MIM:112264; AllianceGenome:HGNC:1067
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PCP; TLD; OI13; PCP2; PCOLC
Summary
This gene encodes a protein that is capable of inducing formation of cartilage in vivo. Although other bone morphogenetic proteins are members of the TGF-beta superfamily, this gene encodes a protein that is not closely related to other known growth factors. This gene is expressed as alternatively spliced variants that share an N-terminal protease domain but differ in their C-terminal region. [provided by RefSeq, Aug 2008]
Expression
Broad expression in placenta (RPKM 24.6), endometrium (RPKM 12.4) and 22 other tissues See more
Orthologs
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Genomic context

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See BMP1 in Genome Data Viewer
Location:
8p21.3
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (22165372..22212326)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (22439316..22486280)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (22022885..22069839)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene melanoma risk locus-associated MPRA allelic enhancer 8:22014424 Neighboring gene leucine rich repeat LGI family member 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18982 Neighboring gene surfactant protein C Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:22031123-22031622 Neighboring gene uncharacterized LOC124901904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22046165-22046665 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:22048316-22049515 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:22052064-22053263 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22054519-22055286 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22067676-22068367 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22068368-22069058 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22069059-22069750 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22071895-22072757 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22077527-22078227 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:22081363-22081865 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:22084886-22086085 Neighboring gene phytanoyl-CoA 2-hydroxylase interacting protein Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_102823 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:22089242-22089989 Neighboring gene Sharpr-MPRA regulatory region 11422 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:22102421-22103088 Neighboring gene microRNA 320a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Bone morphogenetic protein signaling is a possible therapeutic target in gynecologic cancer. Fukuda T, et al. Cancer Sci, 2023 Mar. PMID 36468782, Free PMC Article
  2. An Analysis of BMP1 Associated with m6A Modification and Immune Infiltration in Pancancer. Zhou Y, et al. Dis Markers, 2022. PMID 36267461, Free PMC Article
  3. Bone morphogenetic protein 1.3 inhibition decreases scar formation and supports cardiomyocyte survival after myocardial infarction. Vukicevic S, et al. Nat Commun, 2022 Jan 10. PMID 35013172, Free PMC Article
  4. [Role of bone morphogenetic protein 1/tolloid proteinase family in the development of teeth and bone]. Xie XD, et al. Hua Xi Kou Qiang Yi Xue Za Zhi, 2020 Oct 1. PMID 33085247, Free PMC Article
  5. Overexpression of BMP1 reflects poor prognosis in clear cell renal cell carcinoma. Xiao W, et al. Cancer Gene Ther, 2020 May. PMID 31155610, Free PMC Article

See all (108) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Activated hepatic stellate cell-derived Bmp-1 induces liver fibrosis via mediating hepatocyte epithelial-mesenchymal transition.
    Title: Activated hepatic stellate cell-derived Bmp-1 induces liver fibrosis via mediating hepatocyte epithelial-mesenchymal transition.
  2. Characterization of erythroferrone oligomerization and its impact on BMP antagonism.
    Title: Characterization of erythroferrone oligomerization and its impact on BMP antagonism.
  3. Bone morphogenetic protein and cancer in spinal fusion: a propensity score-matched analysis.
    Title: Bone morphogenetic protein and cancer in spinal fusion: a propensity score-matched analysis.
  4. Proteolysis of the low-density lipoprotein receptor in hepatocytes is mediated by BMP1 but not by other astacin proteases.
    Title: Proteolysis of the low-density lipoprotein receptor in hepatocytes is mediated by BMP1 but not by other astacin proteases.
  5. KRAS mutation-induced EndMT of brain arteriovenous malformation is mediated through the TGF-beta/BMP-SMAD4 pathway.
    Title: KRAS mutation-induced EndMT of brain arteriovenous malformation is mediated through the TGF-β/BMP-SMAD4 pathway.
  6. The role of stromal BMP/CXCL12 signaling axis in serrated polyp development.
    Title: The role of stromal BMP/CXCL12 signaling axis in serrated polyp development.
  7. Bone morphogenetic protein signaling is a possible therapeutic target in gynecologic cancer.
    Title: Bone morphogenetic protein signaling is a possible therapeutic target in gynecologic cancer.
  8. An Analysis of BMP1 Associated with m6A Modification and Immune Infiltration in Pancancer.
    Title: An Analysis of BMP1 Associated with m6A Modification and Immune Infiltration in Pancancer.
  9. Novel BMP1, CRTAP, and SERPINF1 variants causing autosomal recessive osteogenesis imperfecta.
    Title: Novel BMP1, CRTAP, and SERPINF1 variants causing autosomal recessive osteogenesis imperfecta.
  10. Bone morphogenetic protein 1.3 inhibition decreases scar formation and supports cardiomyocyte survival after myocardial infarction.
    Title: Bone morphogenetic protein 1.3 inhibition decreases scar formation and supports cardiomyocyte survival after myocardial infarction.
Submit: New GeneRIF Correction See all GeneRIFs (70)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Osteogenesis imperfecta type 13
MedGen: C3553887 OMIM: 614856 GeneReviews: Not available
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EBI GWAS Catalog

Description
Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Replication interactions

Interaction Pubs
Knockdown of bone morphogenetic protein 1 (BMP1) by siRNA inhibits the early stages of HIV-1 replication in 293T cells infected with VSV-G pseudotyped HIV-1 PubMed

Protein interactions

Protein Gene Interaction Pubs
Tat tat BMP-1 is upregulated in human epithelial cells by HIV-1 Tat treatment PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ44432

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
enables cytokine activity IEA
Inferred from Electronic Annotation
more info
  
enables growth factor activity IEA
Inferred from Electronic Annotation
more info
  
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables metalloendopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metalloendopeptidase activity TAS
Traceable Author Statement
more info
  
enables metallopeptidase activity NAS
Non-traceable Author Statement
more info
 PubMed 
enables peptidase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables serine-type endopeptidase activity TAS
Traceable Author Statement
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in cartilage condensation TAS
Traceable Author Statement
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in collagen fibril organization TAS
Traceable Author Statement
more info
  
involved_in dorsal/ventral pattern formation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in ossification IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within positive regulation of cartilage development IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein processing IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in proteolysis IDA
Inferred from Direct Assay
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
involved_in skeletal system development NAS
Non-traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region TAS
Traceable Author Statement
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in vesicle IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
bone morphogenetic protein 1
Names
mammalian tolloid protein
procollagen C-endopeptidase
procollagen C-proteinase 3
tolloid-like
NP_001190.1
NP_006120.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_029659.1 RefSeqGene

    Range
    5233..52187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001199.4 → NP_001190.1  bone morphogenetic protein 1 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001190.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1, also known as BMP1-1) represents the shortest transcript and encodes the shorter isoform (1).
    Source sequence(s)
    BC136679, BE619065, M22488
    Consensus CDS
    CCDS34856.1
    UniProtKB/TrEMBL
    Q59F71
    Related
    ENSP00000306121.8, ENST00000306349.13
    Conserved Domains (4) summary
    cd04281
    Location:121 → 320
    ZnMc_BMP1_TLD; Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, ...
    pfam00431
    Location:435 → 544
    CUB; CUB domain
    pfam01400
    Location:128 → 321
    Astacin; Astacin (Peptidase family M12A)
    pfam14670
    Location:555 → 587
    FXa_inhibition; Coagulation Factor Xa inhibitory site

  2. NM_006129.5 → NP_006120.1  bone morphogenetic protein 1 isoform 3 precursor

    See identical proteins and their annotated locations for NP_006120.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3, also known as BMP1-3) differs in the 3' coding region and 3' UTR, compared to variant 1. The resulting isoform (3) has a distinct C-terminus and is longer than isoform 1.
    Source sequence(s)
    BC136679, BU627735
    Consensus CDS
    CCDS6026.1
    UniProtKB/Swiss-Prot
    A8K6F5, B2RN46, D3DSR0, P13497, Q13292, Q13872, Q14874, Q99421, Q99422, Q99423, Q9UL38
    UniProtKB/TrEMBL
    A5PLK9
    Related
    ENSP00000305714.5, ENST00000306385.10
    Conserved Domains (4) summary
    cd04281
    Location:121 → 320
    ZnMc_BMP1_TLD; Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, ...
    pfam00431
    Location:435 → 544
    CUB; CUB domain
    pfam01400
    Location:128 → 321
    Astacin; Astacin (Peptidase family M12A)
    pfam14670
    Location:707 → 742
    FXa_inhibition; Coagulation Factor Xa inhibitory site

RNA

  1. NR_033403.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) has multiple differences compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    BC144366, BU627735
    Related
    ENST00000520982.5

  2. NR_033404.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) uses an alternate splice site in an internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    BC009305, BE619065, M22488
    Related
    ENST00000518913.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    22165372..22212326
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    22439316..22486280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_006128.2: Suppressed sequence

    Description
    NM_006128.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.

  2. NM_006130.1: Suppressed sequence

    Description
    NM_006130.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay candidate.

  3. NM_006131.1: Suppressed sequence

    Description
    NM_006131.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay candidate.

  4. NM_006132.1: Suppressed sequence

    Description
    NM_006132.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay candidate.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P13497.2 GenPept UniProtKB/Swiss-Prot:P13497

Gene LinkOut

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