U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PAPLN papilin, proteoglycan like sulfated glycoprotein [ Bos taurus (cattle) ]

Gene ID: 614084, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Official Symbol
PAPLNprovided by VGNC
Official Full Name
papilin, proteoglycan like sulfated glycoproteinprovided by VGNC
Primary source
VGNC:VGNC:32571
See related
Ensembl:ENSBTAG00000011680
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PAPLN in Genome Data Viewer
Location:
chromosome: 10
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 10 NC_037337.1 (84702195..84739998)

Chromosome 10 - NC_037337.1Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 25 Neighboring gene presenilin 1 Neighboring gene NUMB endocytic adaptor protein Neighboring gene HEAT repeat containing 4 Neighboring gene ribosomal oxygenase 1 Neighboring gene acyl-CoA thioesterase 2

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_037337.1 Chromosome 10 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
papilin

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037337.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    84702195..84739998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024998132.2 → XP_024853900.1  papilin isoform X3

    UniProtKB/TrEMBL
    A0A3Q1LL32, A0A3Q1LLB9
    Related
    ENSBTAP00000057477.1, ENSBTAT00000072418.2
    Conserved Domains (7) summary
    smart00408
    Location:1071 → 1132
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:33 → 84
    TSP1; Thrombospondin type 1 repeats
    pfam00014
    Location:773 → 825
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam05986
    Location:187 → 302
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1249 → 1281
    PLAC; PLAC (protease and lacunin) domain
    pfam16626
    Location:829 → 920
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    cl28434
    Location:1149 → 1233
    I-set; Immunoglobulin I-set domain

  2. XM_059890932.1 → XP_059746915.1  papilin isoform X5

  3. XM_024998133.2 → XP_024853901.1  papilin isoform X4

    UniProtKB/TrEMBL
    A0A3Q1LLB9
    Conserved Domains (6) summary
    smart00408
    Location:1127 → 1188
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:89 → 140
    TSP1; Thrombospondin type 1 repeats
    pfam00014
    Location:829 → 881
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam05986
    Location:243 → 358
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam16626
    Location:885 → 976
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    cl28434
    Location:987 → 1049
    I-set; Immunoglobulin I-set domain

  4. XM_024998129.2 → XP_024853897.1  papilin isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LLB9
    Conserved Domains (7) summary
    smart00408
    Location:1127 → 1188
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:89 → 140
    TSP1; Thrombospondin type 1 repeats
    pfam00014
    Location:829 → 881
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam05986
    Location:243 → 358
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1305 → 1337
    PLAC; PLAC (protease and lacunin) domain
    pfam16626
    Location:885 → 976
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    cl28434
    Location:1205 → 1289
    I-set; Immunoglobulin I-set domain

  5. XM_024998130.2 → XP_024853898.1  papilin isoform X2

    UniProtKB/TrEMBL
    A0A3Q1LLB9
    Conserved Domains (7) summary
    smart00408
    Location:1105 → 1166
    IGc2; Immunoglobulin C-2 Type
    smart00209
    Location:89 → 140
    TSP1; Thrombospondin type 1 repeats
    pfam00014
    Location:807 → 859
    Kunitz_BPTI; Kunitz/Bovine pancreatic trypsin inhibitor domain
    pfam05986
    Location:243 → 358
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1283 → 1315
    PLAC; PLAC (protease and lacunin) domain
    pfam16626
    Location:863 → 954
    Papilin_u7; Linking region between Kunitz_BPTI and I-set on papilin
    cl28434
    Location:1183 → 1267
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.