ATXN7L3 ataxin 7 like 3 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: ATXN7L3provided by VGNC
Official Full Name: ataxin 7 like 3provided by VGNC
Primary source: VGNC:VGNC:38306
See related: Ensembl:ENSCAFG00845009030
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 9

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	9	NC_051813.1 (19892368..19900027)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	9	NC_006591.4 (18587656..18595315)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	9	NC_049230.1 (19073756..19081419)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	9	NC_049269.1 (18746042..18753699)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	9	NC_049750.1 (18929263..18936920)

Chromosome 9 - NC_051813.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

MARC_8253-8254:996688461:1 (e-PCR)
- UniSTS:269944

MARC_7251-7252:996687693:1 (e-PCR)
- UniSTS:269750

MARC_26625-26626:1034086788:1 (e-PCR)
- UniSTS:269045

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables transcription coactivator activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed
involved_in regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of DUBm complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of SAGA complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ataxin-7-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051813.1 Reference ROS_Cfam_1.0

Range

19892368..19900027

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038676273.1 → XP_038532201.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038676277.1 → XP_038532205.1 ataxin-7-like protein 3 isoform X3

UniProtKB/TrEMBL

A0A8C0KCS9, A0A8I3N7I7

Related

ENSCAFP00845012386.1, ENSCAFT00845015918.1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:215 → 244

SCA7; zinc-binding domain
XM_038676276.1 → XP_038532204.1 ataxin-7-like protein 3 isoform X2

UniProtKB/TrEMBL

A0A8C0RBG1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:227 → 256

SCA7; zinc-binding domain
XM_038676278.1 → XP_038532206.1 ataxin-7-like protein 3 isoform X4

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:208 → 237

SCA7; zinc-binding domain
XM_038676274.1 → XP_038532202.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038676275.1 → XP_038532203.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049269.1 Alternate UMICH_Zoey_3.1

Range

18746042..18753699

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038485353.1 → XP_038341281.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038485357.1 → XP_038341285.1 ataxin-7-like protein 3 isoform X3

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:215 → 244

SCA7; zinc-binding domain
XM_038485356.1 → XP_038341284.1 ataxin-7-like protein 3 isoform X2

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:227 → 256

SCA7; zinc-binding domain
XM_038485358.1 → XP_038341286.1 ataxin-7-like protein 3 isoform X4

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:208 → 237

SCA7; zinc-binding domain
XM_038485354.1 → XP_038341282.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038485355.1 → XP_038341283.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049750.1 Alternate UNSW_CanFamBas_1.0

Range

18929263..18936920

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038611088.1 → XP_038467016.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038611092.1 → XP_038467020.1 ataxin-7-like protein 3 isoform X3

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:215 → 244

SCA7; zinc-binding domain
XM_038611091.1 → XP_038467019.1 ataxin-7-like protein 3 isoform X2

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:227 → 256

SCA7; zinc-binding domain
XM_038611094.1 → XP_038467022.1 ataxin-7-like protein 3 isoform X4

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:208 → 237

SCA7; zinc-binding domain
XM_038611089.1 → XP_038467017.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038611090.1 → XP_038467018.1 ataxin-7-like protein 3 isoform X1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049230.1 Alternate UU_Cfam_GSD_1.0

Range

19073756..19081419

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038547120.1 → XP_038403048.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038547124.1 → XP_038403052.1 ataxin-7-like protein 3 isoform X3

UniProtKB/TrEMBL

A0A8C0KCS9, A0A8C0YZW6, A0A8P0NG50

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:215 → 244

SCA7; zinc-binding domain
XM_038547123.1 → XP_038403051.1 ataxin-7-like protein 3 isoform X2

UniProtKB/TrEMBL

A0A8C0RBG1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:227 → 256

SCA7; zinc-binding domain
XM_038547125.1 → XP_038403053.1 ataxin-7-like protein 3 isoform X4

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:208 → 237

SCA7; zinc-binding domain
XM_038547121.1 → XP_038403049.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_038547122.1 → XP_038403050.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

18587656..18595315

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005624401.4 → XP_005624458.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_843534.6 → XP_848627.1 ataxin-7-like protein 3 isoform X3

See identical proteins and their annotated locations for XP_848627.1

UniProtKB/TrEMBL

A0A8C0KCS9, A0A8C0YZW6, A0A8P0NG50

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:215 → 244

SCA7; zinc-binding domain
XM_005624402.4 → XP_005624459.1 ataxin-7-like protein 3 isoform X2

UniProtKB/TrEMBL

A0A8C0RBG1

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:227 → 256

SCA7; zinc-binding domain
XM_851575.6 → XP_856668.3 ataxin-7-like protein 3 isoform X4

See identical proteins and their annotated locations for XP_856668.3

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:208 → 237

SCA7; zinc-binding domain
XM_022422900.2 → XP_022278608.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain
XM_022422901.2 → XP_022278609.1 ataxin-7-like protein 3 isoform X1

UniProtKB/TrEMBL

A0A8C0KCS9

Conserved Domains (2) summary

pfam08209
Location:80 → 112

Sgf11; Sgf11 (transcriptional regulation protein)

pfam08313
Location:234 → 263

SCA7; zinc-binding domain