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atg4b autophagy related 4B cysteine peptidase [ Strongylocentrotus purpuratus (purple sea urchin) ]

Gene ID: 580843, updated on 14-Dec-2023

Summary

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Symbol
atg4b
Full Name
autophagy related 4B cysteine peptidase
Primary source
EchinoBase:ECB-GENE-23055916
Gene type
protein coding
RefSeq status
MODEL
Organism
Strongylocentrotus purpuratus
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
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Genomic context

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See atg4b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145597.1 (29870280..29894342, complement)
Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003579239.1 (55597..67380, complement)

NW_022145597.1Genomic Context describing neighboring genes Neighboring gene band 7 protein AGAP004871-like Neighboring gene probable phospholipid-transporting ATPase IF Neighboring gene multidrug resistance-associated protein 4-like Neighboring gene multidrug resistance-associated protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Spur_5.0 Primary Assembly

Genomic

  1. NW_022145597.1 Reference Spur_5.0 Primary Assembly

    Range
    29870280..29894342 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030982366.1 → XP_030838226.1  cysteine protease ATG4B isoform X6

    UniProtKB/TrEMBL
    A0A7M7NLC7
    Conserved Domains (1) summary
    pfam03416
    Location:50 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_030982362.1 → XP_030838222.1  cysteine protease ATG4B isoform X3

    UniProtKB/TrEMBL
    A0A7M7NL25
    Conserved Domains (1) summary
    pfam03416
    Location:65 → 381
    Peptidase_C54; Peptidase family C54

  3. XM_030982367.1 → XP_030838227.1  cysteine protease ATG4B isoform X7

    UniProtKB/TrEMBL
    A0A7M7SXC8
    Conserved Domains (1) summary
    pfam03416
    Location:31 → 347
    Peptidase_C54; Peptidase family C54

  4. XM_030982361.1 → XP_030838221.1  cysteine protease ATG4B isoform X2

    UniProtKB/TrEMBL
    A0A7M7NL55
    Conserved Domains (1) summary
    pfam03416
    Location:75 → 391
    Peptidase_C54; Peptidase family C54

  5. XM_030982360.1 → XP_030838220.1  cysteine protease ATG4B isoform X1

    UniProtKB/TrEMBL
    A0A7M7NLF6
    Conserved Domains (1) summary
    pfam03416
    Location:81 → 397
    Peptidase_C54; Peptidase family C54

  6. XM_030982364.1 → XP_030838224.1  cysteine protease ATG4B isoform X4

    UniProtKB/TrEMBL
    A0A7M7NQZ2
    Conserved Domains (1) summary
    pfam03416
    Location:60 → 376
    Peptidase_C54; Peptidase family C54

  7. XM_030982365.1 → XP_030838225.1  cysteine protease ATG4B isoform X5

    UniProtKB/TrEMBL
    A0A7M7SXB9
    Conserved Domains (1) summary
    pfam03416
    Location:55 → 371
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
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