lix1l limb and CNS expressed 1 like [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lix1lprovided by ZNC
Official Full Name: limb and CNS expressed 1 likeprovided by ZNC
Primary source: ZFIN:ZDB-GENE-060503-777
See related: Ensembl:ENSDARG00000063244 AllianceGenome:ZFIN:ZDB-GENE-060503-777
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: si:ch211-210h11.10
Summary: Predicted to be involved in autophagosome maturation. Predicted to be active in cytoplasm. Is expressed in eye; hindbrain; and pharyngeal arch 3-7. Orthologous to human LIX1L (limb and CNS expressed 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 19

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	19	NC_007130.7 (7527082..7540821, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	19	NC_007130.6 (7608157..7622380, complement)

Chromosome 19 - NC_007130.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in autophagosome maturation	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: LIX1-like protein

Names: Lix1 homolog-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001126439.1 → NP_001119911.1 LIX1-like protein

Status: PROVISIONAL

Source sequence(s)

BX927401

UniProtKB/TrEMBL

A0A8M1NJC0, A3KQR9

Related

ENSDARP00000115243.1, ENSDART00000143958.2

Conserved Domains (1) summary

pfam14954
Location:101 → 329

LIX1; Limb expression 1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007130.7 Reference GRCz11 Primary Assembly

Range

7527082..7540821 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005159460.4 → XP_005159517.1 LIX1-like protein isoform X1

UniProtKB/TrEMBL

A0A8M2B6G9

Conserved Domains (1) summary

pfam14954
Location:101 → 342

LIX1; Limb expression 1