mrpl2 mitochondrial ribosomal protein L2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: mrpl2provided by ZNC
Official Full Name: mitochondrial ribosomal protein L2provided by ZNC
Primary source: ZFIN:ZDB-GENE-050809-12
See related: Ensembl:ENSDARG00000062568 AllianceGenome:ZFIN:ZDB-GENE-050809-12
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: im:6908224
Summary: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Is expressed in visceral fat. Orthologous to human MRPL2 (mitochondrial ribosomal protein L2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 13

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (51877841..51903165, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (51653169..51662971, complement)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G40521 (e-PCR)
- UniSTS:47682

z7226 (e-PCR), detects polymorphism
- UniSTS:204925

fk37e06.x1 (e-PCR)
- UniSTS:200934

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IBA Inferred from Biological aspect of Ancestor more info
enables structural constituent of ribosome	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mitochondrial translation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within translation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of mitochondrial large ribosomal subunit	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info
located_in ribosome	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: 39S ribosomal protein L2, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001327785.1 → NP_001314714.1 39S ribosomal protein L2, mitochondrial precursor

Status: VALIDATED

Source sequence(s)

EH543927, EH565060, LT631685

UniProtKB/TrEMBL

A0A8M1P304, E7F8R3

Related

ENSDARP00000085077.4, ENSDART00000090644.6

Conserved Domains (1) summary

cl27214
Location:53 → 260

Ribosomal_L2_C; Ribosomal Proteins L2, C-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007124.7 Reference GRCz11 Primary Assembly

Range

51877841..51903165 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021480651.1 → XP_021336326.1 39S ribosomal protein L2, mitochondrial isoform X1

UniProtKB/TrEMBL

A0A8M1P304, E7F8R3

Conserved Domains (1) summary

cl27214
Location:53 → 260

Ribosomal_L2_C; Ribosomal Proteins L2, C-terminal domain
XM_021480652.1 → XP_021336327.1 39S ribosomal protein L2, mitochondrial isoform X1

UniProtKB/TrEMBL

A0A8M1P304, E7F8R3

Conserved Domains (1) summary

cl27214
Location:53 → 260

Ribosomal_L2_C; Ribosomal Proteins L2, C-terminal domain