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si:ch211-183d21.1 si:ch211-183d21.1 [ Danio rerio (zebrafish) ]

Gene ID: 571430, updated on 27-Mar-2024

Summary

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Official Symbol
si:ch211-183d21.1provided by ZNC
Official Full Name
si:ch211-183d21.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8516
See related
Ensembl:ENSDARG00000092499 AllianceGenome:ZFIN:ZDB-GENE-030131-8516
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb14a07; wu:fb14a07
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 24
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (37406431..37428923)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (37518706..37541323)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene N-acetylglucosamine-1-phosphate transferase subunit gamma Neighboring gene SH3 domain binding kinase 1 Neighboring gene NLR family, CARD domain containing 3 Neighboring gene clusterin associated protein 1 Neighboring gene WD repeat domain 90

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein si:ch211-183d21.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    37406431..37428923
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_695016.8 → XP_700108.4  uncharacterized protein si:ch211-183d21.1

    UniProtKB/TrEMBL
    A0A8N7TFJ1, E9QDR6
    Related
    ENSDARP00000117730.1, ENSDART00000138264.2
    Conserved Domains (1) summary
    cl20210
    Location:33 → 128
    LTD; Lamin Tail Domain
Nucleotide Protein
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