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asphd2 aspartate beta-hydroxylase domain containing 2 [ Danio rerio (zebrafish) ]

Gene ID: 569819, updated on 27-Mar-2024

Summary

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Official Symbol
asphd2provided by ZNC
Official Full Name
aspartate beta-hydroxylase domain containing 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-061103-142
See related
Ensembl:ENSDARG00000059629 AllianceGenome:ZFIN:ZDB-GENE-061103-142
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:153516
Summary
Predicted to enable 2-oxoglutarate-dependent dioxygenase activity. Predicted to act upstream of or within peptidyl-amino acid modification. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ASPHD2 (aspartate beta-hydroxylase domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See asphd2 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (39965112..39984668, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (39931339..39950937, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene malectin Neighboring gene calcium binding protein 1a Neighboring gene gamma-glutamyltransferase 5a Neighboring gene gamma-glutamyltransferase 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Correlated expression of retrocopies and parental genes in zebrafish. Zhong Z, et al. Mol Genet Genomics, 2016 Apr. PMID 26561303
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 2-oxoglutarate-dependent dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aspartate beta-hydroxylase domain-containing protein 2
NP_001073514.1
XP_005167441.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080045.1 → NP_001073514.1  aspartate beta-hydroxylase domain-containing protein 2

    See identical proteins and their annotated locations for NP_001073514.1

    Status: PROVISIONAL

    Source sequence(s)
    BC125876
    UniProtKB/Swiss-Prot
    A0JMH0
    Related
    ENSDARP00000077501.4, ENSDART00000083066.5
    Conserved Domains (1) summary
    pfam05118
    Location:191 → 352
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    39965112..39984668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005167384.4 → XP_005167441.1  aspartate beta-hydroxylase domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_005167441.1

    UniProtKB/Swiss-Prot
    A0JMH0
    Conserved Domains (1) summary
    pfam05118
    Location:191 → 352
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0JMH0.1 GenPept UniProtKB/Swiss-Prot:A0JMH0

Gene LinkOut

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