col17a1b collagen, type XVII, alpha 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: col17a1bprovided by ZNC
Official Full Name: collagen, type XVII, alpha 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-7145
See related: Ensembl:ENSDARG00000079011 AllianceGenome:ZFIN:ZDB-GENE-030131-7145
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: col17a1; fk89a06; wu:fk89a06; si:ch211-223p8.6
Summary: Predicted to be an extracellular matrix structural constituent. Acts upstream of or within lateral line system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in hypodermis; lateral line; and neuromast. Human ortholog(s) of this gene implicated in epithelial recurrent erosion dystrophy; junctional epidermolysis bullosa; and junctional epidermolysis bullosa non-Herlitz type. Orthologous to human COL17A1 (collagen type XVII alpha 1 chain). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	13	NC_007124.7 (24750267..24779700)
105	previous assembly	GRCz10 (GCF_000002035.5)	13	NC_007124.6 (24619803..24649255)

Chromosome 13 - NC_007124.7 Genomic Context describing neighboring genes

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Submit: New GeneRIF Correction

Process	Evidence Code	Pubs
acts_upstream_of_or_within lateral line system development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
part_of collagen trimer	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

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The following sections contain reference sequences that belong to a specific genome build. Explain