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gtf3c4 general transcription factor IIIC, polypeptide 4 [ Danio rerio (zebrafish) ]

Gene ID: 568510, updated on 27-Mar-2024

Summary

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Official Symbol
gtf3c4provided by ZNC
Official Full Name
general transcription factor IIIC, polypeptide 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-041008-147
See related
Ensembl:ENSDARG00000069538 AllianceGenome:ZFIN:ZDB-GENE-041008-147
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7138272; si:dkeyp-10e10.3
Summary
Predicted to be part of transcription factor TFIIIC complex. Orthologous to human GTF3C4 (general transcription factor IIIC subunit 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (17413611..17424790, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (17376852..17388164, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene TSC complex subunit 1b Neighboring gene BarH-like homeobox 1b Neighboring gene stomatin Neighboring gene gelsolin a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Identification and expression of mangrove rivulus (Kryptolebias marmoratus) histone deacetylase (HDAC) and lysine acetyltransferase (KAT) genes. Fellous A, et al. Gene, 2019 Apr 5. PMID 30615915
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables histone acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within transcription initiation at RNA polymerase III promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of transcription factor TFIIIC complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIIIC complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
general transcription factor 3C polypeptide 4
XP_021329082.1
XP_696935.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    17413611..17424790 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_691843.8 → XP_696935.1  general transcription factor 3C polypeptide 4

    UniProtKB/TrEMBL
    A0A8N7TDX7
    Related
    ENSDARP00000092069.4, ENSDART00000101295.5
    Conserved Domains (2) summary
    pfam12657
    Location:48 → 234
    TFIIIC_delta; Transcription factor IIIC subunit delta N-term
    pfam12660
    Location:693 → 765
    zf-TFIIIC; Putative zinc-finger of transcription factor IIIC complex

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395085.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    118807..129905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473407.1 → XP_021329082.1  general transcription factor 3C polypeptide 4

    UniProtKB/TrEMBL
    A0A2R8RJ69, A0A8M9PDB1
    Conserved Domains (2) summary
    pfam12657
    Location:48 → 234
    TFIIIC_delta; Transcription factor IIIC subunit delta N-term
    pfam12660
    Location:693 → 765
    zf-TFIIIC; Putative zinc-finger of transcription factor IIIC complex
Nucleotide Protein Strain
Heading Accession and Version

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