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abhd16a abhydrolase domain containing 16A, phospholipase [ Danio rerio (zebrafish) ]

Gene ID: 564613, updated on 27-Mar-2024

Summary

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Official Symbol
abhd16aprovided by ZNC
Official Full Name
abhydrolase domain containing 16A, phospholipaseprovided by ZNC
Primary source
ZFIN:ZDB-GENE-010601-2
See related
Ensembl:ENSDARG00000078929 AllianceGenome:ZFIN:ZDB-GENE-010601-2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
bat5; bat5l; fb55e01; wu:fb55e01
Summary
Predicted to enable acylglycerol lipase activity; palmitoyl-(protein) hydrolase activity; and phospholipase activity. Predicted to be involved in monoacylglycerol catabolic process and phosphatidylserine catabolic process. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human ABHD16A (abhydrolase domain containing 16A, phospholipase). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See abhd16a in Genome Data Viewer
Location:
chromosome: 16
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (10477533..10516966, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (10586631..10626064, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107988037 Neighboring gene valyl-tRNA synthetase 1 Neighboring gene si:ch73-22o12.1 Neighboring gene g6f-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A genome-wide survey of Major Histocompatibility Complex (MHC) genes and their paralogues in zebrafish. Sambrook JG, et al. BMC Genomics, 2005 Nov 4. PMID 16271140, Free PMC Article
  2. Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones. Kolmakov NN, et al. BMC Genomics, 2008 Sep 20. PMID 18803863, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables acylglycerol lipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables acylglycerol lipase activity IEA
Inferred from Electronic Annotation
more info
  
enables phospholipase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in monoacylglycerol catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in phosphatidylserine catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
phosphatidylserine lipase ABHD16A; protein ABHD16A
Names
HLA-B associated transcript 5, like
NP_001104648.1
XP_009290375.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111178.1 → NP_001104648.1  phosphatidylserine lipase ABHD16A

    See identical proteins and their annotated locations for NP_001104648.1

    Status: PROVISIONAL

    Source sequence(s)
    BC155562
    UniProtKB/TrEMBL
    A9JR90
    Related
    ENSDARP00000103741.2, ENSDART00000110606.3
    Conserved Domains (1) summary
    pfam12695
    Location:289 → 419
    Abhydrolase_5; Alpha/beta hydrolase family

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    10477533..10516966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009292100.3 → XP_009290375.1  protein ABHD16A isoform X1

    UniProtKB/TrEMBL
    A0A8M3AQC5
    Conserved Domains (1) summary
    pfam12695
    Location:85 → 215
    Abhydrolase_5; Alpha/beta hydrolase family
Nucleotide Protein Strain
Heading Accession and Version

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