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zfand3 zinc finger, AN1-type domain 3 [ Danio rerio (zebrafish) ]

Gene ID: 563496, updated on 27-Mar-2024

Summary

Official Symbol
zfand3provided by ZNC
Official Full Name
zinc finger, AN1-type domain 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050706-134
See related
Ensembl:ENSDARG00000052833 AllianceGenome:ZFIN:ZDB-GENE-050706-134
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj17a09; wu:fj17a09; zgc:110105; si:ch211-101n16.1
Summary
Predicted to enable DNA binding activity and zinc ion binding activity. Acts upstream of or within endocrine pancreas development. Orthologous to human ZFAND3 (zinc finger AN1-type containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
chromosome: 13
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (44702278..44738551, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (44565374..44601647, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene zinc finger, FYVE domain containing 21 Neighboring gene MAM domain containing glycosylphosphatidylinositol anchor 1 Neighboring gene uncharacterized LOC108191946 Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene transfer RNA valine (anticodon AAC)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Clone Names

  • MGC110105

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within endocrine pancreas development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
AN1-type zinc finger protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030175.1NP_001025346.1  AN1-type zinc finger protein 3

    See identical proteins and their annotated locations for NP_001025346.1

    Status: PROVISIONAL

    Source sequence(s)
    BC098547
    UniProtKB/TrEMBL
    A0A8M1N7A7, Q4KMI6
    Related
    ENSDARP00000069247.2, ENSDART00000074761.3
    Conserved Domains (1) summary
    pfam01754
    Location:1936
    zf-A20; A20-like zinc finger

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    44702278..44738551 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)