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si:dkey-276j7.1 si:dkey-276j7.1 [ Danio rerio (zebrafish) ]

Gene ID: 561769, updated on 27-Mar-2024

Summary

Official Symbol
si:dkey-276j7.1provided by ZNC
Official Full Name
si:dkey-276j7.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-060720-44
See related
Ensembl:ENSDARG00000090872 AllianceGenome:ZFIN:ZDB-GENE-060720-44
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fq41a10
Summary
Is expressed in brain and retina. Orthologous to human C7orf57 (chromosome 7 open reading frame 57). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See si:dkey-276j7.1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (12299184..12314505, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (12064326..12079646, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1a Neighboring gene plakophilin 4 Neighboring gene si:dkey-276j7.2 Neighboring gene glycerol-3-phosphate dehydrogenase 2 (mitochondrial)

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
uncharacterized protein C7orf57 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326548.1NP_001313477.1  uncharacterized protein C7orf57 homolog

    Status: VALIDATED

    Source sequence(s)
    BX950218, EH457050, EH461268
    UniProtKB/TrEMBL
    A0A8M1P8T0, E7FD23
    Related
    ENSDARP00000128722.1, ENSDART00000157058.3

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    12299184..12314505 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005165849.3XP_005165906.1  uncharacterized protein C7orf57 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M2BDC3