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rnf10 ring finger protein 10 [ Danio rerio (zebrafish) ]

Gene ID: 560444, updated on 27-Mar-2024

Summary

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Official Symbol
rnf10provided by ZNC
Official Full Name
ring finger protein 10provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-2969
See related
Ensembl:ENSDARG00000079687 AllianceGenome:ZFIN:ZDB-GENE-030131-2969
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc22g07; wu:fc22g07; si:ch211-15b7.3
Summary
Predicted to enable transcription cis-regulatory region binding activity. Predicted to be involved in positive regulation of myelination and positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Orthologous to human RNF10 (ring finger protein 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
17
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (41260394..41273768, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (41252761..41266135, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene fumarylacetoacetate hydrolase domain containing 2A Neighboring gene zgc:152830 Neighboring gene POP5 homolog, ribonuclease P/MRP subunit Neighboring gene olfactomedin-like 2A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. Cheung CT, et al. BMC Genomics, 2019 Jul 15. PMID 31307377, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription cis-regulatory region binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in positive regulation of myelination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
RING finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001123255.1 → NP_001116727.1  RING finger protein 10

    Status: PROVISIONAL

    Source sequence(s)
    CR382384
    UniProtKB/TrEMBL
    A0A8M1NIH6, B0UXR5
    Related
    ENSDARP00000097766.3, ENSDART00000108518.5
    Conserved Domains (1) summary
    pfam13923
    Location:222 → 263
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    41260394..41273768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005169084.1 → XP_005169141.1  RING finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A8M2BGH7
    Conserved Domains (1) summary
    pfam13923
    Location:222 → 263
    zf-C3HC4_2; Zinc finger, C3HC4 type (RING finger)
Nucleotide Protein Strain
Heading Accession and Version

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