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znf532 zinc finger protein 532 [ Danio rerio (zebrafish) ]

Gene ID: 559908, updated on 27-Mar-2024

Summary

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Official Symbol
znf532provided by ZNC
Official Full Name
zinc finger protein 532provided by ZNC
Primary source
ZFIN:ZDB-GENE-060531-40
See related
Ensembl:ENSDARG00000052894 AllianceGenome:ZFIN:ZDB-GENE-060531-40
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:ch211-233a1.2
Summary
Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF532 (zinc finger protein 532). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (10782003..10816568)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (10689379..10723937)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene retinal homeobox gene 3 Neighboring gene gastrin-releasing peptide Neighboring gene O-acyltransferase like Neighboring gene alpha-kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 532

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    10782003..10816568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017353020.2 → XP_017208509.1  zinc finger protein 532 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  2. XM_005161075.4 → XP_005161132.1  zinc finger protein 532 isoform X1

    See identical proteins and their annotated locations for XP_005161132.1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Related
    ENSDARP00000120865.1, ENSDART00000146248.3
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  3. XM_017353019.2 → XP_017208508.1  zinc finger protein 532 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  4. XM_017353022.2 → XP_017208511.1  zinc finger protein 532 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  5. XM_017353018.2 → XP_017208507.1  zinc finger protein 532 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  6. XM_017353021.2 → XP_017208510.1  zinc finger protein 532 isoform X1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  7. XM_005161073.4 → XP_005161130.1  zinc finger protein 532 isoform X1

    See identical proteins and their annotated locations for XP_005161130.1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  8. XM_005161076.4 → XP_005161133.1  zinc finger protein 532 isoform X1

    See identical proteins and their annotated locations for XP_005161133.1

    UniProtKB/TrEMBL
    A0A8M2B806, F6NP92
    Conserved Domains (3) summary
    sd00017
    Location:1014 → 1034
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:809 → 848
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1200 → 1228
    zf-C2H2_11; zinc-finger C2H2-type

  9. XM_009295225.3 → XP_009293500.1  zinc finger protein 532 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AM08
    Conserved Domains (3) summary
    sd00017
    Location:941 → 961
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam12756
    Location:736 → 775
    zf-C2H2_2; C2H2 type zinc-finger (2 copies)
    pfam16622
    Location:1127 → 1155
    zf-C2H2_11; zinc-finger C2H2-type
Nucleotide Protein Strain
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