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rbm33b RNA binding motif protein 33b [ Danio rerio (zebrafish) ]

Gene ID: 556301, updated on 27-Mar-2024

Summary

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Official Symbol
rbm33bprovided by ZNC
Official Full Name
RNA binding motif protein 33bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-060526-276
See related
Ensembl:ENSDARG00000094896 AllianceGenome:ZFIN:ZDB-GENE-060526-276
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-265a7.2
Summary
Orthologous to human RBM33 (RNA binding motif protein 33). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See rbm33b in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (29993116..30047640)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (30013124..30064109)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine (serotonin) receptor 5A, genome duplicate a Neighboring gene engrailed homeobox 2b Neighboring gene canopy FGF signaling regulator 1 Neighboring gene sonic hedgehog signaling molecule b Neighboring gene DnaJ heat shock protein family (Hsp40) member B6a Neighboring gene transient receptor potential cation channel, subfamily A, member 1a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein rbm33b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    29993116..30047640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021467467.1 → XP_021323142.1  uncharacterized protein rbm33b isoform X3

    UniProtKB/TrEMBL
    A0A8M9P0Q2
    Conserved Domains (1) summary
    cl26464
    Location:141 → 339
    Atrophin-1; Atrophin-1 family

  2. XM_017351790.2 → XP_017207279.1  uncharacterized protein rbm33b isoform X1

    UniProtKB/TrEMBL
    A0A8M6Z1Q1

  3. XM_017351791.2 → XP_017207280.1  uncharacterized protein rbm33b isoform X2

    UniProtKB/TrEMBL
    A0A8M6YTZ7
    Related
    ENSDARP00000113002.1, ENSDART00000138050.3
Nucleotide Protein Strain
Heading Accession and Version

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