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matr3l1.1 matrin 3-like 1.1 [ Danio rerio (zebrafish) ]

Gene ID: 556124, updated on 27-Mar-2024

Summary

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Official Symbol
matr3l1.1provided by ZNC
Official Full Name
matrin 3-like 1.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030616-40
See related
Ensembl:ENSDARG00000001162 AllianceGenome:ZFIN:ZDB-GENE-030616-40
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
wu:fb78d04; wu:fc09f04; wu:fe36a04; si:bz1d10.2
Summary
Predicted to enable RNA binding activity. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 21. Orthologous to human MATR3 (matrin 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 14
Exon count:
21
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (25063316..25078601, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (24766071..24781343, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 216 Neighboring gene si:rp71-1d10.6 Neighboring gene matrin 3-like 1.2 Neighboring gene si:rp71-1d10.8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Dynamics of zebrafish fin regeneration using a pulsed SILAC approach. Nolte H, et al. Proteomics, 2015 Feb. PMID 25504979
  2. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
matrin 3-like 1.1; uncharacterized protein LOC556124
Names
matr3l

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007136.1 → NP_001007137.1  matrin 3-like 1.1

    See identical proteins and their annotated locations for NP_001007137.1

    Status: VALIDATED

    Source sequence(s)
    AL645792
    UniProtKB/TrEMBL
    A0A8M1N334, Q800H4
    Related
    ENSDARP00000112927.1, ENSDART00000135004.3
    Conserved Domains (2) summary
    cd12436
    Location:750 → 826
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:113 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    25063316..25078601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009291034.3 → XP_009289309.1  uncharacterized protein LOC556124 isoform X2

    UniProtKB/TrEMBL
    A0A8M3AP33
    Conserved Domains (2) summary
    cd12436
    Location:1075 → 1151
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:438 → 509
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_009291032.3 → XP_009289307.1  uncharacterized protein LOC556124 isoform X1

    See identical proteins and their annotated locations for XP_009289307.1

    UniProtKB/TrEMBL
    A0A8M3ARX7
    Conserved Domains (2) summary
    cd12436
    Location:1075 → 1151
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:438 → 509
    RRM_SF; RNA recognition motif (RRM) superfamily

  3. XM_009291033.3 → XP_009289308.1  uncharacterized protein LOC556124 isoform X1

    See identical proteins and their annotated locations for XP_009289308.1

    UniProtKB/TrEMBL
    A0A8M3ARX7
    Conserved Domains (2) summary
    cd12436
    Location:1075 → 1151
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:438 → 509
    RRM_SF; RNA recognition motif (RRM) superfamily

  4. XM_005173121.4 → XP_005173178.1  uncharacterized protein LOC556124 isoform X3

    See identical proteins and their annotated locations for XP_005173178.1

    UniProtKB/TrEMBL
    A0A8M1N334, Q800H4
    Conserved Domains (2) summary
    cd12436
    Location:750 → 826
    RRM1_2_MATR3_like; RNA recognition motif 1 and 2 in the matrin 3 family of nuclear proteins
    cl17169
    Location:113 → 184
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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