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ccdc77 coiled-coil domain containing 77 [ Danio rerio (zebrafish) ]

Gene ID: 555400, updated on 27-Mar-2024

Summary

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Official Symbol
ccdc77provided by ZNC
Official Full Name
coiled-coil domain containing 77provided by ZNC
Primary source
ZFIN:ZDB-GENE-050913-54
See related
Ensembl:ENSDARG00000102145 AllianceGenome:ZFIN:ZDB-GENE-050913-54
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:114121
Summary
Predicted to be active in centrosome. Orthologous to human CCDC77 (coiled-coil domain containing 77). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 25
Exon count:
12
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (3549384..3562787)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (3423634..3437054)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-19 Neighboring gene haloacid dehalogenase like hydrolase domain containing 5 Neighboring gene zgc:194202 Neighboring gene leukotriene B4 receptor 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC114121

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in centrosome IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 77

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025478.1 → NP_001020649.1  coiled-coil domain-containing protein 77

    See identical proteins and their annotated locations for NP_001020649.1

    Status: PROVISIONAL

    Source sequence(s)
    BC097180
    UniProtKB/TrEMBL
    Q4V8V6
    Conserved Domains (1) summary
    TIGR02168
    Location:44 → 332
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    3549384..3562787
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017354083.2 → XP_017209572.1  coiled-coil domain-containing protein 77 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YYE2, E7FBZ5
    Conserved Domains (1) summary
    pfam04094
    Location:201 → 413
    DUF390; Protein of unknown function (DUF390)

  2. XM_017354082.2 → XP_017209571.1  coiled-coil domain-containing protein 77 isoform X1

    UniProtKB/TrEMBL
    A0A8M6YYE2, E7FBZ5
    Conserved Domains (1) summary
    pfam04094
    Location:201 → 413
    DUF390; Protein of unknown function (DUF390)

  3. XM_005170661.4 → XP_005170718.1  coiled-coil domain-containing protein 77 isoform X1

    See identical proteins and their annotated locations for XP_005170718.1

    UniProtKB/TrEMBL
    A0A8M6YYE2, E7FBZ5
    Related
    ENSDARP00000136677.1, ENSDART00000166312.2
    Conserved Domains (1) summary
    pfam04094
    Location:201 → 413
    DUF390; Protein of unknown function (DUF390)

  4. XM_005170662.4 → XP_005170719.1  coiled-coil domain-containing protein 77 isoform X1

    See identical proteins and their annotated locations for XP_005170719.1

    UniProtKB/TrEMBL
    A0A8M6YYE2, E7FBZ5
    Conserved Domains (1) summary
    pfam04094
    Location:201 → 413
    DUF390; Protein of unknown function (DUF390)
Nucleotide Protein
Heading Accession and Version

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