U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:rp71-1i20.2 si:rp71-1i20.2 [ Danio rerio (zebrafish) ]

Gene ID: 554678, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
si:rp71-1i20.2provided by ZNC
Official Full Name
si:rp71-1i20.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-207
See related
Ensembl:ENSDARG00000043198 AllianceGenome:ZFIN:ZDB-GENE-040724-207
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:7148368; wu:fa95b07; zgc:113457
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 22
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (6393223..6404943, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (6363377..6375097, complement)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC555502 Neighboring gene uncharacterized LOC108181187 Neighboring gene T-cell surface antigen CD2-like Neighboring gene zgc:113298 Neighboring gene uncharacterized LOC101882933 Neighboring gene zgc:171699 Neighboring gene CD48 antigen-like Neighboring gene si:dkey-19a16.12

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC113457

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC554678

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013487.2 → NP_001013505.2  uncharacterized protein LOC554678 precursor

    Status: VALIDATED

    Source sequence(s)
    AL627164
    UniProtKB/TrEMBL
    A0A8M3AM33, A8DZ56, Q5BJ07
    Conserved Domains (1) summary
    cl11960
    Location:142 → 238
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    6393223..6404943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009295979.1 → XP_009294254.1  uncharacterized protein LOC554678 isoform X1

    UniProtKB/TrEMBL
    A8DZ56
    Related
    ENSDARP00000063419.5, ENSDART00000063420.7
    Conserved Domains (1) summary
    cl11960
    Location:142 → 238
    Ig; Immunoglobulin domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools