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atpaf1 ATP synthase mitochondrial F1 complex assembly factor 1 [ Danio rerio (zebrafish) ]

Gene ID: 550606, updated on 27-Mar-2024

Summary

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Official Symbol
atpaf1provided by ZNC
Official Full Name
ATP synthase mitochondrial F1 complex assembly factor 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-030219-10
See related
Ensembl:ENSDARG00000042799 AllianceGenome:ZFIN:ZDB-GENE-030219-10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
id:ibd1136; zgc:110583; si:dkey-171o17.2
Summary
Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 22
Exon count:
9
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (17192769..17201398)
105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (17166499..17175125)

Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene microRNA mir-2194 Neighboring gene Fras1 related extracellular matrix 1b Neighboring gene RAB3B, member RAS oncogene family Neighboring gene nardilysin b (N-arginine dibasic convertase)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A gene expression screen in zebrafish embryogenesis. Kudoh T, et al. Genome Res, 2001 Dec. PMID 11731487
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein-containing complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase mitochondrial F1 complex assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017907.2 → NP_001017907.2  ATP synthase mitochondrial F1 complex assembly factor 1

    See identical proteins and their annotated locations for NP_001017907.2

    Status: PROVISIONAL

    Source sequence(s)
    BC092940
    UniProtKB/Swiss-Prot
    Q1L987, Q568A9
    Related
    ENSDARP00000110144.2, ENSDART00000130810.3
    Conserved Domains (1) summary
    pfam06644
    Location:58 → 289
    ATP11; ATP11 protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007133.7 Reference GRCz11 Primary Assembly

    Range
    17192769..17201398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021469326.1 → XP_021325001.1  ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PRS4
    Conserved Domains (1) summary
    pfam06644
    Location:7 → 185
    ATP11; ATP11 protein
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q1L987.2 GenPept UniProtKB/Swiss-Prot:Q1L987

Gene LinkOut

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