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gatd3 glutamine amidotransferase class 1 domain containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 550355, updated on 27-Mar-2024

Summary

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Official Symbol
gatd3provided by ZNC
Official Full Name
glutamine amidotransferase class 1 domain containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-050417-147
See related
Ensembl:ENSDARG00000020618 AllianceGenome:ZFIN:ZDB-GENE-050417-147
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
gatd3a; zgc:112056
Summary
Predicted to be active in mitochondrion. Is expressed in alar plate midbrain region; digestive system; head; optic tectum; and optic vesicle. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (32797816..32804953, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (32987070..32994207, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:ch211-165b19.11 Neighboring gene oligodendrocyte lineage transcription factor 2 Neighboring gene myxovirus (influenza virus) resistance C Neighboring gene myxovirus (influenza virus) resistance E

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial
Names
ES1 protein homolog, mitochondrial
glutamine amidotransferase class 1 domain containing 3A
glutamine amidotransferase like class 1 domain containing 3A
glutamine amidotransferase-like class 1 domain-containing protein 3A, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017662.1 → NP_001017662.1  glutamine amidotransferase-like class 1 domain-containing protein 3, mitochondrial

    See identical proteins and their annotated locations for NP_001017662.1

    Status: PROVISIONAL

    Source sequence(s)
    BC093174
    UniProtKB/Swiss-Prot
    F1QCN0
    UniProtKB/TrEMBL
    Q567H2
    Related
    ENSDARP00000120266.1, ENSDART00000134763.3
    Conserved Domains (2) summary
    cd03133
    Location:32 → 252
    GATase1_ES1; Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1
    COG0693
    Location:38 → 186
    ThiJ; Putative intracellular protease/amidase [General function prediction only]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    32797816..32804953 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F1QCN0.1 GenPept UniProtKB/Swiss-Prot:F1QCN0

Gene LinkOut

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