cdca7a cell division cycle associated 7a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cdca7aprovided by ZNC
Official Full Name: cell division cycle associated 7aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-29
See related: Ensembl:ENSDARG00000077620 AllianceGenome:ZFIN:ZDB-GENE-050417-29
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cdca7; sb:cb590; sr:nyz142; zgc:110113
Summary: Acts upstream of or within regulation of hematopoietic stem cell differentiation and thymus development. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Is expressed in several structures, including digestive system; nervous system; neural tube; thymus; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 3. Orthologous to human CDCA7 (cell division cycle associated 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (2879759..2892284, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (2873743..2886233, complement)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell cycle	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within cell division	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of hematopoietic stem cell differentiation	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within thymus development	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

Go to the top of the page Help

Preferred Names: cell division cycle-associated protein 7; cell division cycle-associated protein 7a

Names: cell division cycle associated 7

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017574.1 → NP_001017574.1 cell division cycle-associated protein 7a

See identical proteins and their annotated locations for NP_001017574.1

Status: PROVISIONAL

Source sequence(s)

BC092737

UniProtKB/TrEMBL

Q568S8

Conserved Domains (1) summary

pfam10497
Location:285 → 383

zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007120.7 Reference GRCz11 Primary Assembly

Range

2879759..2892284 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005167416.4 → XP_005167473.1 cell division cycle-associated protein 7 isoform X2

UniProtKB/TrEMBL

A0A8M2BES1, B0S4Y9

Related

ENSDARP00000117288.1, ENSDART00000140695.3

Conserved Domains (1) summary

pfam10497
Location:299 → 397

zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1
XM_005167415.4 → XP_005167472.1 cell division cycle-associated protein 7 isoform X1

UniProtKB/TrEMBL

A0A8M2BET8

Conserved Domains (1) summary

pfam10497
Location:300 → 398

zf-4CXXC_R1; Zinc-finger domain of monoamine-oxidase A repressor R1