U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ADC arginine decarboxylase [ Solanum lycopersicum (tomato) ]

Gene ID: 543960, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
ADC
Gene description
arginine decarboxylase
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Solanum lycopersicum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Solanum subgen. Lycopersicon
Also known as
ARGDC
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
103 current SL3.0 (GCF_000188115.4) 1 NC_015438.3 (97060649..97063448)
102 previous assembly SL2.50 (GCF_000188115.3) 1 NC_015438.2 (97146263..97149062)

Chromosome 1 - NC_015438.3Genomic Context describing neighboring genes Neighboring gene 30S ribosomal protein S31, mitochondrial Neighboring gene ubiquitin fusion degradation protein 1 homolog Neighboring gene NADP-dependent D-sorbitol-6-phosphate dehydrogenase Neighboring gene uncharacterized LOC112940517 Neighboring gene polyprenol reductase 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Cloning of tomato (Lycopersicon esculentum Mill.) arginine decarboxylase gene and its expression during fruit ripening. Rastogi R, et al. Plant Physiol, 1993 Nov. PMID 8022938, Free PMC Article
  2. Large-scale analysis of full-length cDNAs from the tomato (Solanum lycopersicum) cultivar Micro-Tom, a reference system for the Solanaceae genomics. Aoki K, et al. BMC Genomics, 2010 Mar 30. PMID 20350329, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arginine decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in arginine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermidine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
arginine decarboxylase
Names
Hop-interacting protein THI107
NP_001234649.2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001247720.2 → NP_001234649.2  arginine decarboxylase

    See identical proteins and their annotated locations for NP_001234649.2

    Status: VALIDATED

    Source sequence(s)
    AEKE03003137
    UniProtKB/TrEMBL
    G8Z275
    Conserved Domains (2) summary
    cd06830
    Location:112 → 606
    PLPDE_III_ADC; Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase
    PLN02439
    Location:117 → 682
    PLN02439; arginine decarboxylase

RefSeqs of Annotated Genomes: Solanum lycopersicum Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference SL3.0 Primary Assembly

Genomic

  1. NC_015438.3 Reference SL3.0 Primary Assembly

    Range
    97060649..97063448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49726.1 GenPept UniProtKB/Swiss-Prot:P49726

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases