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LOC542363 alcohol dehydrogenase 1 [ Zea mays ]

Gene ID: 542363, updated on 11-Apr-2024

Summary

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Gene symbol
LOC542363
Gene description
alcohol dehydrogenase 1
Locus tag
ZEAMMB73_Zm00001d033931
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Zea mays
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Also known as
adh1; adh1A; Adh1-1F; Adh1-1S; GRMZM2G442658
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Genomic context

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See LOC542363 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 1 NC_050096.1 (280590395..280594156, complement)
102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 1 NC_024459.2 (278821306..278824958, complement)

Chromosome 1 - NC_050096.1Genomic Context describing neighboring genes Neighboring gene myo-inositol kinase Neighboring gene vacuolar protein sorting-associated protein 51 homolog Neighboring gene Transducin/WD40 repeat-like superfamily protein Neighboring gene uncharacterized LOC541769

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two Alleles of Maize ALCOHOL DEHYDROGENASE 1 Have 3' Structural and Poly(a) Addition Polymorphisms. Sachs MM, et al. Genetics, 1986 Jun. PMID 17246333, Free PMC Article
  2. cDNA cloning and induction of the alcohol dehydrogenase gene (Adh1) of maize. Gerlach WL, et al. Proc Natl Acad Sci U S A, 1982 May. PMID 16593188, Free PMC Article
  3. Transgenic DNA introgressed into traditional maize landraces in Oaxaca, Mexico. Quist D, et al. Nature, 2001 Nov 29. PMID 11734853
  4. The paleontology of intergene retrotransposons of maize. SanMiguel P, et al. Nat Genet, 1998 Sep. PMID 9731528
  5. Investigation of the bottleneck leading to the domestication of maize. Eyre-Walker A, et al. Proc Natl Acad Sci U S A, 1998 Apr 14. PMID 9539756, Free PMC Article

See all (24) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-(hydroxymethyl)glutathione dehydrogenase (NAD(P)+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alcohol dehydrogenase (NAD+) activity, zinc-dependent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in formaldehyde catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alcohol dehydrogenase 1
NP_001105409.2
XP_008648693.1
XP_023156252.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111939.2 → NP_001105409.2  alcohol dehydrogenase 1

    Status: VALIDATED

    Source sequence(s)
    AY104302
    UniProtKB/Swiss-Prot
    P00333
    UniProtKB/TrEMBL
    Q43264
    Conserved Domains (1) summary
    cd08301
    Location:8 → 376
    alcohol_DH_plants; Plant alcohol dehydrogenase

RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

Genomic

  1. NC_050096.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Range
    280590395..280594156 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008650471.3 → XP_008648693.1  alcohol dehydrogenase 1 isoform X1

    See identical proteins and their annotated locations for XP_008648693.1

    UniProtKB/Swiss-Prot
    P00333
    UniProtKB/TrEMBL
    Q43264
    Conserved Domains (1) summary
    cd08301
    Location:8 → 376
    alcohol_DH_plants; Plant alcohol dehydrogenase

  2. XM_023300484.2 → XP_023156252.1  alcohol dehydrogenase 1 isoform X1

    UniProtKB/Swiss-Prot
    P00333
    UniProtKB/TrEMBL
    Q43264
    Conserved Domains (1) summary
    cd08301
    Location:8 → 376
    alcohol_DH_plants; Plant alcohol dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P00333.1 GenPept UniProtKB/Swiss-Prot:P00333

Gene LinkOut

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