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lrrc1 leucine rich repeat containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 541316, updated on 27-Mar-2024

Summary

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Official Symbol
lrrc1provided by ZNC
Official Full Name
leucine rich repeat containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050320-1
See related
Ensembl:ENSDARG00000102684 AllianceGenome:ZFIN:ZDB-GENE-050320-1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:101523
Summary
Orthologous to human LRRC1 (leucine rich repeat containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 13
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (2254236..2308351, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (2122945..2151873, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene muscular LMNA-interacting protein Neighboring gene protein scribble homolog Neighboring gene elongin A, like Neighboring gene kelch-like family member 31

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
leucine-rich repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001013445.1 → NP_001013463.1  leucine-rich repeat-containing protein 1

    See identical proteins and their annotated locations for NP_001013463.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090814
    UniProtKB/TrEMBL
    Q5BL36
    Related
    ENSDARP00000138287.1, ENSDART00000158462.2
    Conserved Domains (3) summary
    cd00116
    Location:23 → 243
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:38 → 60
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:37 → 94
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    2254236..2308351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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