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ATG9A autophagy related 9A [ Bos taurus (cattle) ]

Gene ID: 540482, updated on 4-Apr-2024

Summary

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Official Symbol
ATG9Aprovided by VGNC
Official Full Name
autophagy related 9Aprovided by VGNC
Primary source
VGNC:VGNC:26262
See related
BGD:BT13106; Ensembl:ENSBTAG00000020608
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ATG9
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (107170285..107179723, complement)

Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1-type containing 2B Neighboring gene ATP binding cassette subfamily B member 6 Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 Neighboring gene galactosidase beta 1 like Neighboring gene serine/threonine kinase 16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in phagophore assembly site IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 9A
Names
APG9-like 1
ATG9 autophagy related 9 homolog A
autophagy protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034706.2 → NP_001029878.1  autophagy-related protein 9A

    See identical proteins and their annotated locations for NP_001029878.1

    Status: PROVISIONAL

    Source sequence(s)
    BC140511
    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    107170285..107179723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010802366.4 → XP_010800668.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800668.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  2. XM_005202865.5 → XP_005202922.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202922.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  3. XM_024977137.2 → XP_024832905.1  autophagy-related protein 9A isoform X2

    Related
    ENSBTAP00000027461.5, ENSBTAT00000027461.6
    Conserved Domains (1) summary
    pfam04109
    Location:161 → 510
    APG9; Autophagy protein Apg9

  4. XM_015459234.2 → XP_015314720.1  autophagy-related protein 9A isoform X1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  5. XM_005202866.4 → XP_005202923.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202923.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  6. XM_005202864.4 → XP_005202921.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_005202921.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  7. XM_010802365.3 → XP_010800667.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800667.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  8. XM_010802364.4 → XP_010800666.1  autophagy-related protein 9A isoform X1

    See identical proteins and their annotated locations for XP_010800666.1

    UniProtKB/Swiss-Prot
    A5D7D0, Q3T904
    Conserved Domains (1) summary
    pfam04109
    Location:179 → 528
    APG9; Autophagy protein Apg9

  9. XM_010802369.4 → XP_010800671.1  autophagy-related protein 9A isoform X3

    Conserved Domains (1) summary
    pfam04109
    Location:83 → 432
    APG9; Autophagy protein Apg9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q3T904.1 GenPept UniProtKB/Swiss-Prot:Q3T904

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