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ATP13A3 ATPase 13A3 [ Bos taurus (cattle) ]

Gene ID: 523889, updated on 3-Apr-2024

Summary

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Official Symbol
ATP13A3provided by VGNC
Official Full Name
ATPase 13A3provided by VGNC
Primary source
VGNC:VGNC:26279
See related
BGD:BT11451; Ensembl:ENSBTAG00000013204
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
35
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 1 NC_037328.1 (73048146..73127596)

Chromosome 1 - NC_037328.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 44 Neighboring gene microRNA mir-2287 Neighboring gene uncharacterized LOC104970894 Neighboring gene glycoprotein V platelet Neighboring gene leucine rich repeat containing 15

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037328.1 Chromosome 1 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyamine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in polyamine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polyamine-transporting ATPase 13A3
NP_001179514.1
XP_005201547.1
XP_005201549.1
XP_024845414.1
XP_024845418.1
XP_059740736.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192585.1 → NP_001179514.1  polyamine-transporting ATPase 13A3

    See identical proteins and their annotated locations for NP_001179514.1

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000001
    UniProtKB/TrEMBL
    A0A3Q1M5T0, E1BG26
    Related
    ENSBTAP00000065678.2, ENSBTAT00000079971.2
    Conserved Domains (1) summary
    TIGR01657
    Location:14 → 1149
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037328.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    73048146..73127596
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059884753.1 → XP_059740736.1  polyamine-transporting ATPase 13A3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q1LMJ5

  2. XM_005201490.5 → XP_005201547.1  polyamine-transporting ATPase 13A3 isoform X1

    See identical proteins and their annotated locations for XP_005201547.1

    UniProtKB/TrEMBL
    A0A3Q1LMJ5, A0A3Q1M5T0
    Related
    ENSBTAP00000017579.5, ENSBTAT00000017579.6
    Conserved Domains (1) summary
    TIGR01657
    Location:14 → 1149
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

  3. XM_024989650.2 → XP_024845418.1  polyamine-transporting ATPase 13A3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q1M5T0, E1BG26
    Conserved Domains (1) summary
    TIGR01657
    Location:14 → 1149
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

  4. XM_024989646.2 → XP_024845414.1  polyamine-transporting ATPase 13A3 isoform X2

    UniProtKB/TrEMBL
    A0A3Q1M2D1, A0A3Q1M5T0
    Related
    ENSBTAP00000069740.2, ENSBTAT00000077077.2
    Conserved Domains (1) summary
    TIGR01657
    Location:14 → 1122
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)

  5. XM_005201492.5 → XP_005201549.1  polyamine-transporting ATPase 13A3 isoform X1

    See identical proteins and their annotated locations for XP_005201549.1

    UniProtKB/TrEMBL
    A0A3Q1LMJ5, A0A3Q1M5T0
    Conserved Domains (1) summary
    TIGR01657
    Location:14 → 1149
    P-ATPase-V; P-type ATPase of unknown pump specificity (type V)
Nucleotide Protein Strain
Heading Accession and Version

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